SEVERE: Failed to start Neo Server on port [7474]

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vahid chakoshy

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Jan 22, 2014, 2:41:50 AM1/22/14
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I cant run neo4j on my ubuntu server, and this is my neo4j log

Jan 22, 2014 11:01:19 AM org.neo4j.server.logging.Logger log
INFO: Setting startup timeout to: 120000ms based on -1
Jan 22, 2014 11:01:21 AM org.neo4j.server.logging.Logger log
SEVERE: 
org.neo4j.server.ServerStartupException: Starting Neo4j Server failed: Error starting org.neo4j.kernel.EmbeddedGraphDatabase, /usr/local/src/neo4j-community-2.0.0/data/graph.db
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:209)
at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:87)
at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:50)
Caused by: java.lang.RuntimeException: Error starting org.neo4j.kernel.EmbeddedGraphDatabase, /usr/local/src/neo4j-community-2.0.0/data/graph.db
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:333)
at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:63)
at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:92)
at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:198)
at org.neo4j.kernel.impl.recovery.StoreRecoverer.recover(StoreRecoverer.java:115)
at org.neo4j.server.preflight.PerformRecoveryIfNecessary.run(PerformRecoveryIfNecessary.java:59)
at org.neo4j.server.preflight.PreFlightTasks.run(PreFlightTasks.java:70)
at org.neo4j.server.AbstractNeoServer.runPreflightTasks(AbstractNeoServer.java:319)
at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:144)
... 2 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.extension.KernelExtensions@4b9de054' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:504)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:310)
... 10 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.lucene.LuceneKernelExtension@5df0330b' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:504)
at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)
at org.neo4j.kernel.extension.KernelExtensions.start(KernelExtensions.java:118)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:498)
... 12 more
Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.index.impl.lucene.LuceneDataSource@3fc9dd8c' was successfully initialized, but failed to start. Please see attached cause exception.
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:504)
at org.neo4j.kernel.lifecycle.LifeSupport.bringToState(LifeSupport.java:411)
at org.neo4j.kernel.lifecycle.LifeSupport.add(LifeSupport.java:324)
at org.neo4j.kernel.impl.transaction.XaDataSourceManager.registerDataSource(XaDataSourceManager.java:236)
at org.neo4j.index.lucene.LuceneKernelExtension.start(LuceneKernelExtension.java:79)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:498)
... 15 more
Caused by: java.lang.NullPointerException
at org.neo4j.kernel.impl.index.IndexProviderStore.<init>(IndexProviderStore.java:66)
at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexStore(LuceneDataSource.java:301)
at org.neo4j.index.impl.lucene.LuceneDataSource.start(LuceneDataSource.java:224)
at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:498)
... 20 more

Jan 22, 2014 11:01:21 AM org.neo4j.server.logging.Logger log
SEVERE: Failed to start Neo Server on port [7474]

Sukaant Chaudhary

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Jan 22, 2014, 3:09:53 AM1/22/14
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Hi,
Use the following command as root:
netstat -tulpn

If you get something like this:

tcp6       0      0 127.0.0.1:7473          :::*                    LISTEN      1157/java      
tcp6       0      0 127.0.0.1:7474          :::*                    LISTEN      1157/java      

Then use the following command:
kill 1157

Again try to start neo4j, hope it will work.

-Sukaant Chaudhary


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vahid chakoshy

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Jan 22, 2014, 3:14:56 AM1/22/14
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neo is not started bro, 

ps aux | grep java
         root      2576  0.0  0.0  11172   980 pts/3    S+   11:43   0:00 grep --color=auto java

Michael Hunger

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Jan 22, 2014, 4:43:21 AM1/22/14
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After the discussion on SO, I'm still confused, there are too many
parallel Neo4j versions going on.

I gone one set of logs from you where a missing
allow_store_upgrade=true is the reason for a failed start (2.0)
And another one for 1.8.3 which fails because a thread doing NIO was
interrupted (don't know by what).

For the log you just posted, can you also post exceptions from
graph.db/messages.log ?

Thanks

vahid chakoshy

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Jan 22, 2014, 4:57:18 AM1/22/14
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hi Michael, this is message.log
 
2014-01-22 09:09:33.130+0000 INFO  [o.n.k.i.DiagnosticsManager]: --- INITIALIZED diagnostics START ---
2014-01-22 09:09:33.135+0000 INFO  [o.n.k.i.DiagnosticsManager]: Neo4j Kernel properties:
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: neostore.propertystore.db.mapped_memory=2526M
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: neo_store=/var/lib/neo4j/data/graph.db/neostore
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: neostore.nodestore.db.mapped_memory=701M
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: allow_store_upgrade=true
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: neostore.relationshipstore.db.mapped_memory=3095M
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: neostore.propertystore.db.strings.mapped_memory=2147M
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: store_dir=/var/lib/neo4j/data/graph.db
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: keep_logical_logs=true
2014-01-22 09:09:33.141+0000 INFO  [o.n.k.i.DiagnosticsManager]: neostore.propertystore.db.arrays.mapped_memory=2433M
2014-01-22 09:09:33.142+0000 INFO  [o.n.k.i.DiagnosticsManager]: ephemeral=false
2014-01-22 09:09:33.143+0000 INFO  [o.n.k.i.DiagnosticsManager]: Diagnostics providers:
2014-01-22 09:09:33.143+0000 INFO  [o.n.k.i.DiagnosticsManager]: org.neo4j.kernel.configuration.Config
2014-01-22 09:09:33.143+0000 INFO  [o.n.k.i.DiagnosticsManager]: org.neo4j.kernel.info.DiagnosticsManager
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: SYSTEM_MEMORY
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: JAVA_MEMORY
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: OPERATING_SYSTEM
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: JAVA_VIRTUAL_MACHINE
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: CLASSPATH
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: LIBRARY_PATH
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: SYSTEM_PROPERTIES
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: LINUX_SCHEDULERS
2014-01-22 09:09:33.144+0000 INFO  [o.n.k.i.DiagnosticsManager]: NETWORK
2014-01-22 09:09:33.145+0000 INFO  [o.n.k.i.DiagnosticsManager]: System memory information:
2014-01-22 09:09:33.147+0000 INFO  [o.n.k.i.DiagnosticsManager]: Total Physical memory: 31.42 GB
2014-01-22 09:09:33.148+0000 INFO  [o.n.k.i.DiagnosticsManager]: Free Physical memory: 17.61 GB
2014-01-22 09:09:33.148+0000 INFO  [o.n.k.i.DiagnosticsManager]: Committed virtual memory: 10.48 GB
2014-01-22 09:09:33.148+0000 INFO  [o.n.k.i.DiagnosticsManager]: Total swap space: 4.20 GB
2014-01-22 09:09:33.149+0000 INFO  [o.n.k.i.DiagnosticsManager]: Free swap space: 4.20 GB
2014-01-22 09:09:33.149+0000 INFO  [o.n.k.i.DiagnosticsManager]: JVM memory information:
2014-01-22 09:09:33.150+0000 INFO  [o.n.k.i.DiagnosticsManager]: Free  memory: 440.34 MB
2014-01-22 09:09:33.150+0000 INFO  [o.n.k.i.DiagnosticsManager]: Total memory: 486.00 MB
2014-01-22 09:09:33.150+0000 INFO  [o.n.k.i.DiagnosticsManager]: Max   memory: 7.71 GB
2014-01-22 09:09:33.152+0000 INFO  [o.n.k.i.DiagnosticsManager]: Garbage Collector: ParNew: [Par Eden Space, Par Survivor Space]
2014-01-22 09:09:33.152+0000 INFO  [o.n.k.i.DiagnosticsManager]: Garbage Collector: ConcurrentMarkSweep: [Par Eden Space, Par Survivor Space, CMS Old Gen, CMS Perm Gen]
2014-01-22 09:09:33.154+0000 INFO  [o.n.k.i.DiagnosticsManager]: Memory Pool: Code Cache (Non-heap memory): committed=2.44 MB, used=684.38 kB, max=48.00 MB, threshold=0.00 B
2014-01-22 09:09:33.154+0000 INFO  [o.n.k.i.DiagnosticsManager]: Memory Pool: Par Eden Space (Heap memory): committed=134.06 MB, used=45.66 MB, max=1.17 GB, threshold=?
2014-01-22 09:09:33.155+0000 INFO  [o.n.k.i.DiagnosticsManager]: Memory Pool: Par Survivor Space (Heap memory): committed=16.75 MB, used=0.00 B, max=149.75 MB, threshold=?
2014-01-22 09:09:33.156+0000 INFO  [o.n.k.i.DiagnosticsManager]: Memory Pool: CMS Old Gen (Heap memory): committed=335.19 MB, used=0.00 B, max=6.39 GB, threshold=0.00 B
2014-01-22 09:09:33.156+0000 INFO  [o.n.k.i.DiagnosticsManager]: Memory Pool: CMS Perm Gen (Non-heap memory): committed=20.75 MB, used=12.71 MB, max=82.00 MB, threshold=0.00 B
2014-01-22 09:09:33.156+0000 INFO  [o.n.k.i.DiagnosticsManager]: Operating system information:
2014-01-22 09:09:33.157+0000 INFO  [o.n.k.i.DiagnosticsManager]: Operating System: Linux; version: 3.11.0-15-generic; arch: amd64; cpus: 24
2014-01-22 09:09:33.157+0000 INFO  [o.n.k.i.DiagnosticsManager]: Max number of file descriptors: 4096
2014-01-22 09:09:33.158+0000 INFO  [o.n.k.i.DiagnosticsManager]: Number of open file descriptors: 72
2014-01-22 09:09:33.158+0000 INFO  [o.n.k.i.DiagnosticsManager]: Process id: 11996@mana1
2014-01-22 09:09:33.158+0000 INFO  [o.n.k.i.DiagnosticsManager]: Byte order: LITTLE_ENDIAN
2014-01-22 09:09:33.158+0000 INFO  [o.n.k.i.DiagnosticsManager]: Local timezone: Asia/Tehran
2014-01-22 09:09:33.158+0000 INFO  [o.n.k.i.DiagnosticsManager]: JVM information:
2014-01-22 09:09:33.158+0000 INFO  [o.n.k.i.DiagnosticsManager]: VM Name: Java HotSpot(TM) 64-Bit Server VM
2014-01-22 09:09:33.159+0000 INFO  [o.n.k.i.DiagnosticsManager]: VM Vendor: Oracle Corporation
2014-01-22 09:09:33.159+0000 INFO  [o.n.k.i.DiagnosticsManager]: VM Version: 24.51-b03
2014-01-22 09:09:33.159+0000 INFO  [o.n.k.i.DiagnosticsManager]: JIT compiler: HotSpot 64-Bit Tiered Compilers
2014-01-22 09:09:33.160+0000 INFO  [o.n.k.i.DiagnosticsManager]: VM Arguments: [-XX:+DisableExplicitGC, -Dorg.neo4j.server.properties=conf/neo4j-server.properties, -Djava.util.logging.config.file=conf/logging.properties, -Dlog4j.configuration=file:conf/log4j.properties, -XX:+UseConcMarkSweepGC, -XX:+CMSClassUnloadingEnabled, -Dneo4j.home=/var/lib/neo4j, -Dneo4j.instance=/var/lib/neo4j, -Dfile.encoding=UTF-8]
2014-01-22 09:09:33.160+0000 INFO  [o.n.k.i.DiagnosticsManager]: Java classpath:
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [loader.1] file:/usr/lib/jvm/java-7-oracle/jre/lib/ext/sunjce_provider.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [bootstrap] /usr/lib/jvm/java-7-oracle/jre/classes
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-digester-1.8.1.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/geronimo-jta_1.1_spec-1.1.1.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/mimepull-1.6.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/rrd4j-2.0.7.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jetty-util-9.0.5.v20130815.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jackson-core-asl-1.9.7.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jackson-jaxrs-1.9.7.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-lucene-index-2.0.0.jar
2014-01-22 09:09:33.164+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/neo4j-server-2.0.0-static-web.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [bootstrap] /usr/lib/jvm/java-7-oracle/jre/lib/jce.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-shell-2.0.0.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-cypher-compiler-2.0-2.0.0.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/logback-access-1.0.9.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/neo4j-browser-2.0.0.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/neo4j-server-2.0.0.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-io-1.4.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/server-api-2.0.0.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-cypher-commons-2.0.0.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jersey-multipart-1.9.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [bootstrap] /usr/lib/jvm/java-7-oracle/jre/lib/jfr.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-cypher-compiler-1.9-2.0.0.jar
2014-01-22 09:09:33.165+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [bootstrap] /usr/lib/jvm/java-7-oracle/jre/lib/sunrsasign.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/javax.servlet-3.0.0.v201112011016.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/org.apache.servicemix.bundles.jline-0.9.94_1.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jetty-webapp-9.0.5.v20130815.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/parboiled-core-1.1.6.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-compiler-2.6.1.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jetty-security-9.0.5.v20130815.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/scala-library-2.10.3.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jetty-servlet-9.0.5.v20130815.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/lucene-core-3.6.2.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/concurrentlinkedhashmap-lru-1.3.1.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/asm-3.1.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-logging-1.1.1.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-lang-2.4.jar
2014-01-22 09:09:33.166+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jetty-http-9.0.5.v20130815.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-graph-matching-2.0.0.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/rhino-1.7R3.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jsr311-api-1.1.2.r612.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jetty-io-9.0.5.v20130815.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/logback-classic-1.0.9.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [bootstrap] /usr/lib/jvm/java-7-oracle/jre/lib/jsse.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [loader.1] file:/usr/lib/jvm/java-7-oracle/jre/lib/ext/localedata.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [loader.1] file:/usr/lib/jvm/java-7-oracle/jre/lib/ext/sunpkcs11.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-beanutils-1.8.0.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/bcprov-jdk16-140.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-udc-2.0.0.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [loader.1] file:/usr/lib/jvm/java-7-oracle/jre/lib/ext/dnsns.jar
2014-01-22 09:09:33.167+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/etc/neo4j/
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-graph-algo-2.0.0.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-jmx-2.0.0.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/parboiled-scala_2.10-1.1.6.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/slf4j-api-1.6.2.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jersey-server-1.9.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-kernel-2.0.0.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-collections-3.2.1.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [bootstrap] /usr/lib/jvm/java-7-oracle/jre/lib/resources.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [loader.1] file:/usr/lib/jvm/java-7-oracle/jre/lib/ext/zipfs.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/janino-2.6.1.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/lib/neo4j-cypher-2.0.0.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/logback-core-1.0.9.jar
2014-01-22 09:09:33.168+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [bootstrap] /usr/lib/jvm/java-7-oracle/jre/lib/rt.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [loader.1] file:/usr/lib/jvm/java-7-oracle/jre/lib/ext/sunec.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-configuration-1.6.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jersey-core-1.9.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/commons-beanutils-core-1.8.0.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jetty-server-9.0.5.v20130815.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jackson-mapper-asl-1.9.7.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jetty-xml-9.0.5.v20130815.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [bootstrap] /usr/lib/jvm/java-7-oracle/jre/lib/charsets.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]:  [classpath + loader.0] file:/usr/share/neo4j/system/lib/jcl-over-slf4j-1.6.1.jar
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]: Library path:
2014-01-22 09:09:33.169+0000 INFO  [o.n.k.i.DiagnosticsManager]: /usr/java/packages/lib/amd64
2014-01-22 09:09:33.170+0000 INFO  [o.n.k.i.DiagnosticsManager]: /usr/lib64
2014-01-22 09:09:33.170+0000 INFO  [o.n.k.i.DiagnosticsManager]: /lib64
2014-01-22 09:09:33.170+0000 INFO  [o.n.k.i.DiagnosticsManager]: /lib
2014-01-22 09:09:33.170+0000 INFO  [o.n.k.i.DiagnosticsManager]: /usr/lib
2014-01-22 09:09:33.170+0000 INFO  [o.n.k.i.DiagnosticsManager]: System.properties:
2014-01-22 09:09:33.170+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.boot.library.path = /usr/lib/jvm/java-7-oracle/jre/lib/amd64
2014-01-22 09:09:33.170+0000 INFO  [o.n.k.i.DiagnosticsManager]: org.neo4j.server.properties = conf/neo4j-server.properties
2014-01-22 09:09:33.170+0000 INFO  [o.n.k.i.DiagnosticsManager]: path.separator = :
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: file.encoding.pkg = sun.io
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: user.country = US
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.java.launcher = SUN_STANDARD
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.os.patch.level = unknown
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: user.dir = /var/lib/neo4j
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: log4j.configuration = file:conf/log4j.properties
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.jnu.encoding = UTF-8
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.management.compiler = HotSpot 64-Bit Tiered Compilers
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: user.home = /var/lib/neo4j
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: user.timezone = Asia/Tehran
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: file.encoding = UTF-8
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: user.name = neo4j
2014-01-22 09:09:33.171+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.java.command = org.neo4j.server.Bootstrapper
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.arch.data.model = 64
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: user.language = en
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: awt.toolkit = sun.awt.X11.XToolkit
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: file.separator = /
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.io.unicode.encoding = UnicodeLittle
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.cpu.endian = little
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: neo4j.instance = /var/lib/neo4j
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: neo4j.home = /var/lib/neo4j
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: sun.cpu.isalist = 
2014-01-22 09:09:33.172+0000 INFO  [o.n.k.i.DiagnosticsManager]: Linux scheduler information:
2014-01-22 09:09:33.174+0000 INFO  [o.n.k.i.DiagnosticsManager]: noop [deadline] cfq 
2014-01-22 09:09:33.174+0000 INFO  [o.n.k.i.DiagnosticsManager]: noop [deadline] cfq 
2014-01-22 09:09:33.175+0000 INFO  [o.n.k.i.DiagnosticsManager]: noop [deadline] cfq 
2014-01-22 09:09:33.175+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.175+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.175+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.175+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.176+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.176+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.176+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.176+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.177+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.177+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.177+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.177+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.177+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.178+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.178+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.178+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.178+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.178+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.179+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.179+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.179+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.179+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.179+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.180+0000 INFO  [o.n.k.i.DiagnosticsManager]: none
2014-01-22 09:09:33.180+0000 INFO  [o.n.k.i.DiagnosticsManager]: Network information:
2014-01-22 09:09:33.181+0000 INFO  [o.n.k.i.DiagnosticsManager]: Interface eth0:
2014-01-22 09:09:33.181+0000 INFO  [o.n.k.i.DiagnosticsManager]:     address: fe80:0:0:0:250:56ff:fe9a:ef10%2
2014-01-22 09:09:33.181+0000 INFO  [o.n.k.i.DiagnosticsManager]:     address: 79.175.170.179
2014-01-22 09:09:33.182+0000 INFO  [o.n.k.i.DiagnosticsManager]: Interface lo:
2014-01-22 09:09:33.182+0000 INFO  [o.n.k.i.DiagnosticsManager]:     address: 0:0:0:0:0:0:0:1%1
2014-01-22 09:09:33.182+0000 INFO  [o.n.k.i.DiagnosticsManager]:     address: 127.0.0.1
2014-01-22 09:09:33.182+0000 INFO  [o.n.k.i.DiagnosticsManager]: --- INITIALIZED diagnostics END ---
2014-01-22 09:09:33.365+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.relationshiptypestore.db.names non clean shutdown detected
2014-01-22 09:09:33.372+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.relationshiptypestore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-01-22 09:09:33.374+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.relationshiptypestore.db non clean shutdown detected
2014-01-22 09:09:33.375+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.relationshiptypestore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=0b)
2014-01-22 09:09:33.375+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.labeltokenstore.db.names non clean shutdown detected
2014-01-22 09:09:33.375+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.labeltokenstore.db.names] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-01-22 09:09:33.376+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.labeltokenstore.db non clean shutdown detected
2014-01-22 09:09:33.376+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.labeltokenstore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=5b)
2014-01-22 09:09:33.377+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.strings non clean shutdown detected
2014-01-22 09:09:33.377+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.propertystore.db.strings] brickCount=0 brickSize=2251264b mappedMem=2251292672b (storeSize=128b)
2014-01-22 09:09:33.377+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.index.keys non clean shutdown detected
2014-01-22 09:09:33.377+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.propertystore.db.index.keys] brickCount=0 brickSize=0b mappedMem=0b (storeSize=38b)
2014-01-22 09:09:33.378+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.index non clean shutdown detected
2014-01-22 09:09:33.378+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.propertystore.db.index] brickCount=0 brickSize=0b mappedMem=0b (storeSize=9b)
2014-01-22 09:09:33.380+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.arrays non clean shutdown detected
2014-01-22 09:09:33.380+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.propertystore.db.arrays] brickCount=0 brickSize=2551168b mappedMem=2551185408b (storeSize=128b)
2014-01-22 09:09:33.388+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db non clean shutdown detected
2014-01-22 09:09:33.388+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.propertystore.db] brickCount=0 brickSize=2648682b mappedMem=2648702976b (storeSize=41b)
2014-01-22 09:09:33.391+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.relationshipstore.db non clean shutdown detected
2014-01-22 09:09:33.391+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.relationshipstore.db] brickCount=0 brickSize=3245319b mappedMem=3245342720b (storeSize=33b)
2014-01-22 09:09:33.392+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.nodestore.db.labels non clean shutdown detected
2014-01-22 09:09:33.392+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.nodestore.db.labels] brickCount=0 brickSize=0b mappedMem=0b (storeSize=68b)
2014-01-22 09:09:33.394+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.nodestore.db non clean shutdown detected
2014-01-22 09:09:33.394+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.nodestore.db] brickCount=0 brickSize=735042b mappedMem=735051776b (storeSize=14b)
2014-01-22 09:09:33.395+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.schemastore.db non clean shutdown detected
2014-01-22 09:09:33.396+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore.schemastore.db] brickCount=0 brickSize=0b mappedMem=0b (storeSize=64b)
2014-01-22 09:09:33.405+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore non clean shutdown detected
2014-01-22 09:09:33.405+0000 INFO  [o.n.k.i.n.s.StoreFactory]: [/var/lib/neo4j/data/graph.db/neostore] brickCount=0 brickSize=0b mappedMem=0b (storeSize=63b)
2014-01-22 09:09:33.601+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: Non clean shutdown detected on log [/var/lib/neo4j/data/graph.db/nioneo_logical.log.1]. Recovery started ...
2014-01-22 09:09:33.604+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: [/var/lib/neo4j/data/graph.db/nioneo_logical.log.1] logVersion=6 with committed tx=1
2014-01-22 09:09:33.605+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: [/var/lib/neo4j/data/graph.db/nioneo_logical.log.1] entries found=0 lastEntryPos=16
2014-01-22 09:09:33.605+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: Opened logical log [/var/lib/neo4j/data/graph.db/nioneo_logical.log.1] version=6, lastTxId=-1 (recovered)
2014-01-22 09:09:33.605+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: XaResourceManager[nioneo_logical.log] sorting 0 xids
2014-01-22 09:09:33.606+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: XaResourceManager[nioneo_logical.log] checkRecoveryComplete 0 xids
2014-01-22 09:09:33.609+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.relationshiptypestore.db.names rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.612+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.labeltokenstore.db.names rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.614+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.labeltokenstore.db rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.616+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.index.keys rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.618+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.index rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.619+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.strings rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.621+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.arrays rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.623+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.625+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.relationshipstore.db rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.627+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.nodestore.db.labels rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.629+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.nodestore.db rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.630+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.schemastore.db rebuild id generator, highId=1 defragged count=0
2014-01-22 09:09:33.632+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore rebuild id generator, highId=7 defragged count=0
2014-01-22 09:09:33.633+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: XaResourceManager[nioneo_logical.log] recovery completed.
2014-01-22 09:09:33.633+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: Recovery on log [/var/lib/neo4j/data/graph.db/nioneo_logical.log.1] completed.
2014-01-22 09:09:33.639+0000 INFO  [o.n.k.i.t.TxManager]: TM opening log: /var/lib/neo4j/data/graph.db/tm_tx_log.1
2014-01-22 09:09:33.655+0000 INFO  [o.n.k.i.t.TxManager]: TM shutting down
2014-01-22 09:09:33.657+0000 INFO  [o.n.k.i.t.x.XaLogicalLog]: Closed log /var/lib/neo4j/data/graph.db/nioneo_logical.log
2014-01-22 09:09:33.658+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.relationshiptypestore.db.names hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.659+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.relationshiptypestore.db hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.661+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.labeltokenstore.db.names hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.662+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.labeltokenstore.db hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.664+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.strings hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.666+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.index.keys hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.667+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.index hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.668+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db.arrays hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.670+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.propertystore.db hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.671+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.relationshipstore.db hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.673+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.nodestore.db.labels hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.674+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.nodestore.db hit=0 miss=0 switches=0 ooe=0
2014-01-22 09:09:33.676+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore.schemastore.db hit=0 miss=1 switches=0 ooe=0
2014-01-22 09:09:33.677+0000 INFO  [o.n.k.i.n.s.StoreFactory]: /var/lib/neo4j/data/graph.db/neostore hit=0 miss=10 switches=0 ooe=0
2014-01-22 09:09:33.679+0000 INFO  [o.n.k.i.n.x.NeoStoreXaDataSource]: NeoStore closed
2014-01-22 09:09:33.679+0000 INFO  [o.n.k.i.DiagnosticsManager]: --- STOPPING diagnostics START ---
2014-01-22 09:09:33.679+0000 INFO  [o.n.k.i.DiagnosticsManager]: --- STOPPING diagnostics END ---
2014-01-22 09:09:33.679+0000 ERROR [o.n.k.EmbeddedGraphDatabase]: Startup failed: Component 'org.neo4j.kernel.extension.KernelExtensions@4b9de054' was successfully initialized, but failed to start. Please see attached cause exception.: Component 'org.neo4j.index.lucene.LuceneKernelExtension@5df0330b' was successfully initialized, but failed to start. Please see attached cause exception.: Component 'org.neo4j.index.impl.lucene.LuceneDataSource@3fc9dd8c' was successfully initialized, but failed to start. Please see attached cause exception.: null
2014-01-22 09:09:33.680+0000 INFO  [o.n.k.EmbeddedGraphDatabase]: Shutdown started

Michael Hunger

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Jan 22, 2014, 5:05:54 AM1/22/14
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These are two different databases, the first log shows:
/usr/local/src/neo4j-community-2.0.0/data/graph.db as database path
The second log shows: /var/lib/neo4j/data/graph.db

Something is really wrong with your installation.

Do you try to start the debian package?
If so, can you check the database path that is configured in
/etc/neo4j/neo4j-server.properties?

How do you start it? If you installed Neo4j as a service at some
point, it will (afaik) always try to start the service.

So I think cleaning out all residue first (and checking e.g. by
searching for files containing neo4j in the name after the cleanup in
the whole system) and then doing a clean install again would probably
solve the problem.

vahid chakoshy

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Jan 22, 2014, 5:10:57 AM1/22/14
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i remove all neo from this server and all sources, then install by apt, 
start with:
       /etc/init.d/neo4j-service start
log with:
       tail /var/lib/neo4j/data/graph.db/messages.log -f

errors still show in message.log as i send to you


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Michael Hunger

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Jan 22, 2014, 6:17:43 AM1/22/14
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Did you check after the clean up with? find / -iname "*neo4j*" ?

But then why are there two different graph-database directories in the two logs?

Can you check /etc/neo4j/neo4j-server.properties what db-directory it points to?
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