neo4j-biotech

Contact owners and managers

1–30 of 33

Welcome to the Neo4j-Biotech Google Group,

feel free to discuss everything related to graph databases and applications and projects from the biology domain, from proteins and genome sequences to ontologies and systematics.

If you join the group, please introduce yourself and your project and then feel free to explore the archives and collaborate in any ongoing discussions.

0 selected

mmil...@gmail.com, … Michael Hunger9

6/19/18

Hi All, it would be cool if you could add links to your projects / publications / code / datasets :)

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Hi All, it would be cool if you could add links to your projects / publications / code / datasets :)

6/19/18

6/18/18

Graphs in cancer research?

This message is from my colleague Maria, perhaps any of you can help. Hello lovely researchers! I

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Graphs in cancer research?

This message is from my colleague Maria, perhaps any of you can help. Hello lovely researchers! I

6/18/18

Antonio Fabregat Mundo

6/26/17

Introducing myself to the list

Hi all, As a new member in the list, the best is to introduce myself, and the project that I work in,

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Introducing myself to the list

Hi all, As a new member in the list, the best is to introduce myself, and the project that I work in,

6/26/17

Michael Hunger, … Davide Mottin3

6/25/17

Blog Post: GraphConnect SFO Talk from Daniel Himmelstein

Hi Daniel, very interesting work. In terms of graph algorithms actually there is a vast literature in

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Blog Post: GraphConnect SFO Talk from Daniel Himmelstein

Hi Daniel, very interesting work. In terms of graph algorithms actually there is a vast literature in

6/25/17

Michael Hunger2

6/24/17

Graph Databases in Life Sciences Workshop in Berlin - Quick summary & proceedings

Really cool, Daniela Butano from intermine.org who's also speaking in the next Neo4j London

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Graph Databases in Life Sciences Workshop in Berlin - Quick summary & proceedings

Really cool, Daniela Butano from intermine.org who's also speaking in the next Neo4j London

6/24/17

Michael Hunger2

6/24/17

Listing/Promoting Neo4j related life-scienes and healthcare publications and projects on neo4j.com

There, we also offer a Life Sciences and Healthcare Accelerator Program for groups and researchers

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Listing/Promoting Neo4j related life-scienes and healthcare publications and projects on neo4j.com

There, we also offer a Life Sciences and Healthcare Accelerator Program for groups and researchers

6/24/17

6/23/17

Pheno4J - a gene to phenotype graph database - Presentation Recording

Last night, Nikolas Pontikos spoke about Pheno4J - a gene to phenotype graph database created to make

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Pheno4J - a gene to phenotype graph database - Presentation Recording

Last night, Nikolas Pontikos spoke about Pheno4J - a gene to phenotype graph database created to make

6/23/17

5/30/17

Neo4j Life Sciences Workshop in Berlin, June 21

Hello, We are very pleased to announce that we're holding a Graph Databases in Life and Health

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Neo4j Life Sciences Workshop in Berlin, June 21

Hello, We are very pleased to announce that we're holding a Graph Databases in Life and Health

5/30/17

3/18/16

International Conference on Systems Biology (ICSB) 2016

Hi all I thought I would let you know about the International Conference on Systems Biology to be

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International Conference on Systems Biology (ICSB) 2016

Hi all I thought I would let you know about the International Conference on Systems Biology to be

3/18/16

2/2/16

Video link: Big Data in Genomics - How Neo4j helps to develop new drugs

Hi all In the January Neo4j London meetup, Martin Preusse spoke about how he used Neo4j. The link to

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Video link: Big Data in Genomics - How Neo4j helps to develop new drugs

Hi all In the January Neo4j London meetup, Martin Preusse spoke about how he used Neo4j. The link to

2/2/16

1/25/16

Meetup - Big Data in Genomics: How Neo4j helps to develop new drugs

Hi all If you're around in London this Wednesday (27 January), you're very welcome to pop

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Meetup - Big Data in Genomics: How Neo4j helps to develop new drugs

Hi all If you're around in London this Wednesday (27 January), you're very welcome to pop

1/25/16

1/25/16

Semantic Web applications and tools for life sciences (SWAT4LS) International Conference

Hi all Further to my email below, I should like to let you know that the proceedings of SWAT4LS 2015

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Semantic Web applications and tools for life sciences (SWAT4LS) International Conference

Hi all Further to my email below, I should like to let you know that the proceedings of SWAT4LS 2015

1/25/16

11/25/15

STON: Translator of SBGN PD and AF maps into Neo4j

Hi all I thought I would pass on a link to a framework at http://sourceforge.net/projects/ston/. This

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STON: Translator of SBGN PD and AF maps into Neo4j

Hi all I thought I would pass on a link to a framework at http://sourceforge.net/projects/ston/. This

11/25/15

11/9/15

Building a repository of biomedical ontologies with Neo4j

Hi all I thought I would pass on a link to the slides of a very interesting talk given recently by

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Building a repository of biomedical ontologies with Neo4j

Hi all I thought I would pass on a link to the slides of a very interesting talk given recently by

11/9/15

Michael Hunger, Keiichiro Ono2

7/28/15

Cytoscape & Neo4j

Hi Michael. Actually, I'm one of the authors of this App. It was developed by a grad student for

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Cytoscape & Neo4j

Hi Michael. Actually, I'm one of the authors of this App. It was developed by a grad student for

7/28/15

Sunit Jain, Michael Hunger3

7/13/15

Query optimization question

Thank you! How selective is (o1:ORGANISM{gene_A:"Yes"}) ??? There are a total of 17

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Query optimization question

Thank you! How selective is (o1:ORGANISM{gene_A:"Yes"}) ??? There are a total of 17

7/13/15

7/10/15

Optimizing a query

Hi Here is what I have: (PROTEIN) - [BELONGS_TO] -> (CLUSTER) (PROTEIN) - [FOUND_IN] -> (

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Optimizing a query

Hi Here is what I have: (PROTEIN) - [BELONGS_TO] -> (CLUSTER) (PROTEIN) - [FOUND_IN] -> (

7/10/15

Michael Hunger, … Petra Selmer6

6/15/15

Petra will be the caretaker of all things Biotech/LifeScience + Neo4j

Hi everybody Martin, thanks very much for your email - I'll now answer your questions. What we

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Petra will be the caretaker of all things Biotech/LifeScience + Neo4j

Hi everybody Martin, thanks very much for your email - I'll now answer your questions. What we

6/15/15

5/9/15

A Biotech Use-Case for Neo4j to be Featured at StampedeCon2015

My group uses Neo4j extensively to manage genetic ancestry data in an active biotech pipeline. One of

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A Biotech Use-Case for Neo4j to be Featured at StampedeCon2015

My group uses Neo4j extensively to manage genetic ancestry data in an active biotech pipeline. One of

5/9/15

Michael Hunger, … Milton Y. Nishiyama Jr4

11/18/14

Metabolic Pathways

Hi Martin, I had the same feeling when I modeled and created the three model examples, but now I'

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Metabolic Pathways

Hi Martin, I had the same feeling when I modeled and created the three model examples, but now I'

11/18/14

Benny Kneissl, … Craig Taverner8

9/3/14

Storage of numeric values in Neo4j

Hi Craig, I've seen this tree structure in a Neo4j workshop but I thought it will not help me in

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Storage of numeric values in Neo4j

Hi Craig, I've seen this tree structure in a Neo4j workshop but I thought it will not help me in

9/3/14

Benny Kneissl, ben.but...@neotechnology.com4

7/15/14

Neo4j and Gene-Disease Association ontology

On Tuesday, July 15, 2014 12:59:01 PM UTC+1, Benny Kneissl wrote: I just want to clarify if there are

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Neo4j and Gene-Disease Association ontology

On Tuesday, July 15, 2014 12:59:01 PM UTC+1, Benny Kneissl wrote: I just want to clarify if there are

7/15/14

Jayne Ihaka, Martin Preusse2

7/13/14

Neo4j and Saccharomyces Genome Database

Hi Jayne, interesting! Your gist looks like you can use it to find GO terms associated to chemical/

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Neo4j and Saccharomyces Genome Database

Hi Jayne, interesting! Your gist looks like you can use it to find GO terms associated to chemical/

7/13/14

Pablo Pareja, … Eduardo Pareja Tobes7

2/28/14

Bio4j accepted as organization for Google Summer of Code 2014

Hi Kei sure, will do! Eduardo Pareja Tobes On Fri, Feb 28, 2014 at 11:26 PM, Keiichiro Ono <keiono

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Bio4j accepted as organization for Google Summer of Code 2014

Hi Kei sure, will do! Eduardo Pareja Tobes On Fri, Feb 28, 2014 at 11:26 PM, Keiichiro Ono <keiono

2/28/14

Michael Hunger, … Eduardo Pareja-Tobes26

2/24/14

Re: [Neo4j] You are working with Neo4j and biology or biotech? I'd love to hear from you.

sorry for the typo: “As I said before we're going anyway so no problem” but anyway we're OK

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Re: [Neo4j] You are working with Neo4j and biology or biotech? I'd love to hear from you.

sorry for the typo: “As I said before we're going anyway so no problem” but anyway we're OK

2/24/14

Michael Hunger, Viktor Bojović2

11/29/13

FYI: Are graph databases ready for bioinformatics?

Hi Michael, I didn't read the paper and don't understand how neo4j MATCH keyword works. Does

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FYI: Are graph databases ready for bioinformatics?

Hi Michael, I didn't read the paper and don't understand how neo4j MATCH keyword works. Does

11/29/13

11/15/13

Really cool presentation from Larry Hengl about Cypher in a Bioinformatics context @ Novartis

Cheers Michael http://larryhengl.github.io/slides/IDD2013/

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Really cool presentation from Larry Hengl about Cypher in a Bioinformatics context @ Novartis

Cheers Michael http://larryhengl.github.io/slides/IDD2013/

11/15/13

12/10/12

Blog post about the Life Science workshop in Ghent

Dear Community, we had a great workshop in Ghent last week, so I thought it would be nice to do a

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Blog post about the Life Science workshop in Ghent

Dear Community, we had a great workshop in Ghent last week, so I thought it would be nice to do a

12/10/12

Pablo Pareja, Peter Neubauer3

11/15/12

Slides from my Bio4j presentation at the Workshop: "Graph databases in Life Sciences"

Thanks! ;) Sure, I'll also post a message in the main list. Cheers, Pablo On Thu, Nov 15, 2012 at

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Slides from my Bio4j presentation at the Workshop: "Graph databases in Life Sciences"

Thanks! ;) Sure, I'll also post a message in the main list. Cheers, Pablo On Thu, Nov 15, 2012 at

11/15/12

Michael Hunger, … Peter Neubauer8

10/31/12

Hi, I am Peter Neubauer and inventor and co-founder of Neo4j. I love to support OSS and connect

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Hi, I am Peter Neubauer and inventor and co-founder of Neo4j. I love to support OSS and connect

10/31/12

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