I'm trying to determine if the NemaGene contigs are from EST sequences that are all publicly available in the INSDC.
Looking in the NemeGene Cluster Data Download page
http://nematode.net/NN3_frontpage.cgi?navbar_selection=nemagene&subnav_selection=cluster_data_ftpthere are HISTORY files which give the ESTs that contribute to a cluster, for example for M. incognita:
050621 meloidogyne_incognita.fasta.screen.ace.1:
MI00001, Contig1, EST#=1, 9033909.c1;
###############################
MI00002, Contig2, EST#=1, ra06g05.y2;
###############################
MI00003, Contig3, EST#=1, ra11a02.y1;
###############################
MI00004, Contig4, EST#=1, ra14f03.y2;
###############################
MI00005, Contig5, EST#=1, ra16c12.y2;
etc.
Most of the EST clone IDs (
ra06g05.y2, ra11a02.y1,
ra14f03.y2,
ra16c12.y2 etc.) are easily identifiable as ESTs in the INSDC.
However I cannot identify the ID
'9033909.c1' on the second line.
Is this an ID of a 454 sequence?
Which public database is this sequence held in?
Thanks,
Gary Williams
WormBase