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Welcome to the forum to discuss tips and problems with the NeuroAnatomy Toolbox (aka natverse), a suite of R packages and related web applications including NBLAST neuron search.

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George Yerou, Greg Jefferis4

10/16/20

Q&A

Interpreting Score for Neuron against GAl4 Lines.

Dear George, I'm not sure that I can offer any real insight, certainly without access to your

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Interpreting Score for Neuron against GAl4 Lines.

Dear George, I'm not sure that I can offer any real insight, certainly without access to your

10/16/20

MQChen, Greg Jefferis2

1/25/20

Q&A

About the soma location when using the nblast

Dear MQChen, Somehow we missed this query last December – apologies. The current NBLAST

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nblast

Q&A

About the soma location when using the nblast

Dear MQChen, Somehow we missed this query last December – apologies. The current NBLAST

1/25/20

Isabel D'Alessandro, Greg Jefferis4

8/6/19

Q&A

Compare Uploaded Tracing with FlyLight Gal4 lines

Hi Isabel, Sorry it seems like I missed your follow-up at the time. Info below for posterity. Best,

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nblast

nblast-on-the-fly

Q&A

Compare Uploaded Tracing with FlyLight Gal4 lines

Hi Isabel, Sorry it seems like I missed your follow-up at the time. Info below for posterity. Best,

8/6/19

Shruthi Ravindranath, Gregory Jefferis6

6/26/19

Q&A

Running NBLAST against FlyCircuit neurons

Thank you, that works great! On Friday, June 21, 2019 at 5:39:58 AM UTC-4, Greg Jefferis wrote: Dear

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flycircuit_neurons

nblast

Q&A

Running NBLAST against FlyCircuit neurons

Thank you, that works great! On Friday, June 21, 2019 at 5:39:58 AM UTC-4, Greg Jefferis wrote: Dear

6/26/19

Michael Kunst, Greg Jefferis3

3/8/19

Q&A

generate dps files for Gal4 images

Dear Greg, Thanks a lot, it works. I will convert a test set of Gal4 lines to dotprops and keep you

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image-processing

nblast

Q&A

generate dps files for Gal4 images

Dear Greg, Thanks a lot, it works. I will convert a test set of Gal4 lines to dotprops and keep you

3/8/19

Jingpeng Wu, Gregory Jefferis2

10/30/18

Q&A

what to do if the distance or absolute dot product is outside of the scoremat?

On 30 Oct 2018, at 15:22, Jingpeng Wu <jingp...@gmail.com> wrote: I see you have a score

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nat

nblast

Q&A

what to do if the distance or absolute dot product is outside of the scoremat?

On 30 Oct 2018, at 15:22, Jingpeng Wu <jingp...@gmail.com> wrote: I see you have a score

10/30/18

Jingpeng Wu, Greg Jefferis3

10/23/18

Q&A

error while saving neurons as swc format

thanks for the help, your solution works! On Monday, October 22, 2018 at 6:36:33 PM UTC-4, Greg

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nat

nblast

Q&A

error while saving neurons as swc format

thanks for the help, your solution works! On Monday, October 22, 2018 at 6:36:33 PM UTC-4, Greg

10/23/18

Jingpeng Wu, Gregory Jefferis3

10/15/18

Q&A

what is the proper way to save the distance matrix?

thanks a lot, that works perfectly! On Monday, October 15, 2018 at 11:24:05 AM UTC-4, Greg Jefferis

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nat

nblast

Q&A

what is the proper way to save the distance matrix?

thanks a lot, that works perfectly! On Monday, October 15, 2018 at 11:24:05 AM UTC-4, Greg Jefferis

10/15/18

Jingpeng Wu, Gregory Jefferis7

10/13/18

Q&A

How to transform neurons to a list of dotprops?

Great! Happy to try and answer additional queries or to give comments offline if you want to get

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How to transform neurons to a list of dotprops?

Great! Happy to try and answer additional queries or to give comments offline if you want to get

10/13/18

Gregory Jefferis, … Greg Jefferis4

5/20/19

Re: NBLAST Performance

Dear Jingpeng, For reference, there is a fairly recent function http://jefferis.github.io/elmr/

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nblast

Re: NBLAST Performance

Dear Jingpeng, For reference, there is a fairly recent function http://jefferis.github.io/elmr/

5/20/19

Gregory Jefferis

1/20/18

Re: NBLAST tangent calculation question

Dear Tom, I basically always convert to vector cloud aka dotprops using only the vertex positions

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nblast

Re: NBLAST tangent calculation question

Dear Tom, I basically always convert to vector cloud aka dotprops using only the vertex positions

1/20/18

Jaison Omoto, Gregory Jefferis2

11/26/17

Q&A

NBLAST online error

Dear Jason, Many thanks for the heads up. Someone updated the OS on the server on Friday and in so

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nblast

Q&A

NBLAST online error

Dear Jason, Many thanks for the heads up. Someone updated the OS on the server on Friday and in so

11/26/17

Tyler Kennedy, Gregory Jefferis3

9/29/17

Q&A

Thoracic Ganglia

That's what I figured. Thank you for the quick response and for building such a great resource!

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That's what I figured. Thank you for the quick response and for building such a great resource!

9/29/17

Rachel Wilson

5/4/17

Q&A

Gal4 search

Any word on when the Gal4 search functionality will be available again? Is there somebody we can

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Any word on when the Gal4 search functionality will be available again? Is there somebody we can

5/4/17

Margaret H, … Kyunghee Koh19

6/22/17

Q&A

Getting server error: (503) Service Unavailable from NBLAST on the fly GAL4

Dear all, Thanks for generating and maintaining this fantastic tool! Of course, I will cite your

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Getting server error: (503) Service Unavailable from NBLAST on the fly GAL4

Dear all, Thanks for generating and maintaining this fantastic tool! Of course, I will cite your

6/22/17

Rachel Wilson, … Marta Costa3

7/20/16

Q&A

discrepant results accessing NBLAST via VFB site versus SI site

Hi Rachel, It's great to know you find NBLAST useful. The clusters on VFB include all of the

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clusters

nblast

Q&A

discrepant results accessing NBLAST via VFB site versus SI site

Hi Rachel, It's great to know you find NBLAST useful. The clusters on VFB include all of the

7/20/16

mke...@ucla.edu, Greg Jefferis6

2/3/16

Q&A

Searching registered brains for neuron similarity

I was wondering if it would be possible to search a trace (or a neuron ID from flycircuit) in

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Searching registered brains for neuron similarity

I was wondering if it would be possible to search a trace (or a neuron ID from flycircuit) in

2/3/16

Greg Jefferis

8/19/15

Q&A

Preparing images to work with NBLAST

Both the command line and now the online versions of NBLAST (https://github.com/jefferislab/NBLAST_on

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Preparing images to work with NBLAST

Both the command line and now the online versions of NBLAST (https://github.com/jefferislab/NBLAST_on

8/19/15

Joses Ho, Gregory Jefferis5

8/5/15

Q&A

Flipping Flycircuit neurons

Hi, The "mirror" function works perfectly, just had to use the sum of the bounding box for

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Flipping Flycircuit neurons

Hi, The "mirror" function works perfectly, just had to use the sum of the bounding box for

8/5/15

Ajayrama Kumaraswamy, Greg Jefferis2

5/6/15

Q&A

Applying NBLAST on SWC files

Dear Ajay, Many thanks for your interest in this work. As a general comment, I think you might find

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nat

nblast

Q&A

Applying NBLAST on SWC files

Dear Ajay, Many thanks for your interest in this work. As a general comment, I think you might find

5/6/15