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Welcome to the forum to discuss tips and problems with the NeuroAnatomy Toolbox (aka natverse), a suite of R packages and related web applications including NBLAST neuron search.

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George Yerou, Greg Jefferis2

8/6/20

Q&A

xform

Dear George, The error messages are not very clear, but I am afraid that there is currently no

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Dear George, The error messages are not very clear, but I am afraid that there is currently no

8/6/20

Asphodel H, Greg Jefferis2

4/20/20

Q&A

mouselightr: running example failed

Sorry, Tina. I missed this at the time. There is a bug in this demo script. I hope its author will

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mouselightr: running example failed

Sorry, Tina. I missed this at the time. There is a bug in this demo script. I hope its author will

4/20/20

Arthur Zhao, Gregory Jefferis2

10/29/19

Q&A

editing neuron skeletons generated in rgl.plot3d

I always generate pngs with plot3d / snapshot3d. You have to watch out for antialias settings for

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nat

Q&A

editing neuron skeletons generated in rgl.plot3d

I always generate pngs with plot3d / snapshot3d. You have to watch out for antialias settings for

10/29/19

Shruthi Ravindranath, Gregory Jefferis3

6/17/19

Q&A

Append to neuronlist with rbind()?

Thanks a lot for the help. read.neurons() works well for my purpose. On Friday, June 14, 2019 at 9:02

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nat

Q&A

Append to neuronlist with rbind()?

Thanks a lot for the help. read.neurons() works well for my purpose. On Friday, June 14, 2019 at 9:02

6/17/19

Arthur Zhao, Greg Jefferis5

5/23/19

Q&A

connector counting discrepancy between CATMAID and NAT

On Wed, May 22, 2019 at 8:03 PM Greg Jefferis <jeff...@gmail.com> wrote: On Wednesday, May 22,

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catmaid

nat

Q&A

connector counting discrepancy between CATMAID and NAT

On Wed, May 22, 2019 at 8:03 PM Greg Jefferis <jeff...@gmail.com> wrote: On Wednesday, May 22,

5/23/19

Jingpeng Wu, Gregory Jefferis2

10/30/18

Q&A

what to do if the distance or absolute dot product is outside of the scoremat?

On 30 Oct 2018, at 15:22, Jingpeng Wu <jingp...@gmail.com> wrote: I see you have a score

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nat

nblast

Q&A

what to do if the distance or absolute dot product is outside of the scoremat?

On 30 Oct 2018, at 15:22, Jingpeng Wu <jingp...@gmail.com> wrote: I see you have a score

10/30/18

Jingpeng Wu, Greg Jefferis3

10/23/18

Q&A

error while saving neurons as swc format

thanks for the help, your solution works! On Monday, October 22, 2018 at 6:36:33 PM UTC-4, Greg

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nat

nblast

Q&A

error while saving neurons as swc format

thanks for the help, your solution works! On Monday, October 22, 2018 at 6:36:33 PM UTC-4, Greg

10/23/18

Jingpeng Wu, Gregory Jefferis3

10/15/18

Q&A

what is the proper way to save the distance matrix?

thanks a lot, that works perfectly! On Monday, October 15, 2018 at 11:24:05 AM UTC-4, Greg Jefferis

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nat

nblast

Q&A

what is the proper way to save the distance matrix?

thanks a lot, that works perfectly! On Monday, October 15, 2018 at 11:24:05 AM UTC-4, Greg Jefferis

10/15/18

Jingpeng Wu, Gregory Jefferis7

10/13/18

Q&A

How to transform neurons to a list of dotprops?

Great! Happy to try and answer additional queries or to give comments offline if you want to get

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How to transform neurons to a list of dotprops?

Great! Happy to try and answer additional queries or to give comments offline if you want to get

10/13/18

Gregory Jefferis, … Greg Jefferis4

5/20/19

Re: NBLAST Performance

Dear Jingpeng, For reference, there is a fairly recent function http://jefferis.github.io/elmr/

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nblast

Re: NBLAST Performance

Dear Jingpeng, For reference, there is a fairly recent function http://jefferis.github.io/elmr/

5/20/19

Greg Jefferis

6/8/17

Q&A

anyone (interested in) using nat+CMTK on Windows

Dear All, If anyone is (interested in) using the nat R package in conjunction with the CMTK

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anyone (interested in) using nat+CMTK on Windows

Dear All, If anyone is (interested in) using the nat R package in conjunction with the CMTK

6/8/17

Meredith Peterson, Gregory Jefferis3

11/15/16

Q&A

reading/plotting hxsurf and amiramesh files

On 15 Nov 2016, at 17:14, Meredith Peterson <smer....@gmail.com> wrote: Thanks so much! It

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image-processing

nat

Q&A

reading/plotting hxsurf and amiramesh files

On 15 Nov 2016, at 17:14, Meredith Peterson <smer....@gmail.com> wrote: Thanks so much! It

11/15/16

Joses Ho, Gregory Jefferis5

8/13/15

Q&A

Importing skeletonised neurons into NAT

Will give your suggestions a go! Thanks a lot. Regards, Joses On Thu, Aug 13, 2015 at 2:26 PM,

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nat

upload_neuron

Q&A

Importing skeletonised neurons into NAT

Will give your suggestions a go! Thanks a lot. Regards, Joses On Thu, Aug 13, 2015 at 2:26 PM,

8/13/15

Dr Gregory Jefferis

6/29/15

Re: CMTK statistics question

Hi Mike, cmtk.statistics calculates the image statistics within a labelled region. n refers to the

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image-processing

nat

Re: CMTK statistics question

Hi Mike, cmtk.statistics calculates the image statistics within a labelled region. n refers to the

6/29/15

Dr Gregory Jefferis

5/7/15

Calculating overlaps with FlyLight image data Re: FlyLight Matlab screen

Hi Oliver, Thanks a lot for sharing this and sorry for the delayed response! We have our own approach

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image-processing

Calculating overlaps with FlyLight image data Re: FlyLight Matlab screen

Hi Oliver, Thanks a lot for sharing this and sorry for the delayed response! We have our own approach

5/7/15

Ajayrama Kumaraswamy, Greg Jefferis2

5/6/15

Q&A

Applying NBLAST on SWC files

Dear Ajay, Many thanks for your interest in this work. As a general comment, I think you might find

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nat

nblast

Q&A

Applying NBLAST on SWC files

Dear Ajay, Many thanks for your interest in this work. As a general comment, I think you might find

5/6/15

Gregory Jefferis, … Greg Jefferis9

10/24/15

Re: Adding new traced neurons to myneurons

Dear Sonia, On Friday, October 23, 2015 at 8:04:40 PM UTC+1, Sonia Chin wrote: The bridging code you

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nat

Re: Adding new traced neurons to myneurons

Dear Sonia, On Friday, October 23, 2015 at 8:04:40 PM UTC+1, Sonia Chin wrote: The bridging code you

10/24/15