Missing annotation file

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Paul Dampenon

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Jan 25, 2024, 7:09:42 AMJan 25
to nat-user
Hello,

Since the new version of flywire, I am unable to use the most basic functions of fafbseg due to a missing file.

Example:

flywire_partner_summary2(c('720575940629247682', '720575940623302988'), partners = "inputs", threshold = 5)
Error in (function (p, mustWork = NA, read = FALSE, ...)  :
  Path: C:\Users\pauld\AppData\Local/R/fafbseg/flywire_annotations/supplemental_files/Supplemental_file1_annotations.tsv does not exist!

Nevertheless, download_flywire_release() indicates everything is up to date.

Thanks in advance!

Gregory Jefferis

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Jan 25, 2024, 8:24:07 AMJan 25
to Paul Dampenon, nat-user
Thanks, Paul. It must be a windows path issue. Can you make an issue and also ideally tell me what path actually contains these data?

Sent from my iPhone

On 25 Jan 2024, at 12:09, Paul Dampenon <damp...@gmail.com> wrote:

Hello,
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Greg Jefferis

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Jan 26, 2024, 6:59:07 AMJan 26
to Paul Dampenon, nat-user
Hi Paul,

if you update the fafbseg package

natmanager::install(pkgs = 'fafbseg')

and perhaps also download the latest flywire data

download_flywire_release_data()

you should be ok. Best,

Greg.

Paul Dampenon

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Feb 20, 2024, 3:34:04 AMFeb 20
to nat-user
Hi Greg,

It fixed it!

Thank you so much, and apologies for not creating an issue back then.

Best,
Paul

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