Here's the dead link, if that's of any use:
http://www.nanoengineer-1.net/mediawiki/index.php?title=The_GROMACS_Package_for_NE1#Building_and_Installing_GROMACS.2BHDF5
I've linked an mdrun executable from the same version of GROMACS, but I'm not sure how to verify it other than doing an energy minimization, which fails returning a 225 error in grompp.
Specs:
Ubuntu 12.04 with Brians' chroot package (had to manually make sim.so and bad/bin/sim.so to get dynamics running, but otherwise unaltered).
Intel x64
Radeon 5750