mzmine 2 can't load waters raw folders

[carolina...@gmail.com]

Hi everywhere:

I ca't load raw waters folders.

it gives me the following java mistake:

Java.io.IOException:Generic Error (NativeFileReadTask.java:208)

[18:02:41|INFO|NativeFileReadTask]: Opening file C:\Users\Lewis\Desktop\metabolomics  journey\PERA\FIRST\01Marzo2016_1.raw

java.io.IOException: Generic Error

        at net.sf.mzmine.modules.rawdatamethods.rawdataimport.fileformats.NativeFileReadTask.readRAWDump(NativeFileReadTask.java:208)

        at net.sf.mzmine.modules.rawdatamethods.rawdataimport.fileformats.NativeFileReadTask.run(NativeFileReadTask.java:141)

        at net.sf.mzmine.taskcontrol.impl.WorkerThread.run(WorkerThread.java:61)

[18:02:51|SEVERE|WorkerThread]: Error of task Opening file C:\Users\Lewis\Desktop\metabolomics  journey\PERA\FIRST\01Marzo2016_1.raw: java.io.IOException: Generic Error (NativeFileReadTask.java:208)

I'm using the last java version in windows 7 64 bits

java version "1.8.0_77"

Java(TM) SE Runtime Environment (build 1.8.0_77-b03)

Java HotSpot(TM) 64-Bit Server VM (build 25.77-b03, mixed mode)

Any help would be appreciated,

Regards,

Carolina

[Tomas Pluskal]

Please provide a sample file.

Tomas

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[carolina...@gmail.com]

Hi Thomas

here is one example of the raw waters folders that i'm using

https://mega.nz/#F!5w8HWZaR!uFME0Fg2pxVYSX8_Qexm2g

Thanks a lot,

Carolina

[Tomas Pluskal]

Hi Carolina,

I believe I have fixed the bug. Could you test it for me?

Tomas

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[houj...@gmail.com]

I have the same question which couldn't open the raw data of waters. My windows was Win 7 pro sp1 64 bit, and the Java was also 64 bit; the R was 3.2.1; 

Could you tell me how to resolve the problem.

Thank you.

Jinjun Hou 

在 2016年5月25日星期三 UTC+8上午3:46:10，Tomas Pluskal写道：

[Tomas Pluskal]

Try using this build:
https://www.dropbox.com/s/g4qr09atltdxzie/MZmine-2.21.zip?dl=0
Let me know if it worked.

Tomas

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[jamuna risal]

Hello Tomas,

I also tried opening Waters .raw file using the version you have given in the link above, but not able to open it.

I am using WIndows 7, 64 bits, Java Version 1.8.0_91

jamuna

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--

Jamuna Risal Paudel

Potato Research Centre, AAFC

Fredericton, NB, Canada

[Tomas Pluskal]

Can you provide more details what does "not able to open it" mean?
Can you send me one of your raw files?

Tomas

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[jamuna risal]

I mean, I cannot import raw file to MzMine. I can impart same file in MzMine version 1.13 but I get the error message telling MS scans are not available. I have attached the screen shot of the error message. Following file in the link is used to import in both the versions.

https://www.dropbox.com/sh/vuxp7lni8fu7202/AAAzT8HZEtajJmUv2m4RbEOTa?dl=0

Thank you

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[jamuna risal]

version 2.21 will not let import the same raw file with the error message that I have attached just before.

Thank you.

jamuna

[Tomas Pluskal]

I just imported your raw file without problems using the development
version (2.21).
Not sure what error message you were referring to.

Tomas

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[jamuna risal]

Hello Tomas,

I again tried to import the same file just now and got the same error message. I don't know what is the issue.

jamuna

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[jamuna risal]

Hi Carolina and Jinjun Hou,

Could you now import raw file to MzMine? On my computer, I cannot still open although Tomas can open the same file.

 I would appreciate if you could share what was the issue and how you solved if you have done so already.

Tomas, I am sorry to bother you but I tried to import another file to two versions MzMine 2.13 and 2.21, the former one can import but later cannot. I checked java version and other system requirement but still I am not able to do so. Any suggestion would be grateful.

jamuna

[Tomas Pluskal]

Hi Jamuna,

Let's try to debug this problem. It is possible that some DLL library
is missing in your PC and I have it in my PC and that's why it works
for me.

Please find the lib\vendor_lib\waters folder in you MZmine 2.21 installation.
I'll assume it is C:\MZmine\lib\vendor_lib\waters
Try to run these command in Windows command line:

cd C:\MZmine\lib\vendor_lib\waters
WatersRawDump.exe C:\PATH\TO\WATERS\RAW\FILE.RAW > out.dump

(change C:\PATH\TO\WATERS\RAW\FILE.RAW to the actual path of the raw file)

If you get any error message, please send it to me.
If you don't, please send me the resulting out.dump file.

Best,

Tomas

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[jamuna risal]

Hi Tomas,

Yes, there is error message and some dll is missing.

I have attached the screen shot.

jamuna

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[jamuna risal]

Hello Tomas,

While at work computer, I am getting error message MSVCP120.dll is missing in waters folder within vendor library. There is msvcp140 though. I guess it would be updated version. I tried downloading and installing once again as suggested  (and I even copied msvcp120.dll from earlier version), but did not work.

The error message I have attached in the former email was the one when working at home computer in the weekend. But still in both, I cannot open.

Thank you in advance and  I will be waiting for any support.

jamuna

[Tomas Pluskal]

Oh, I hate Windows so bad..

Please try again using this build:
https://www.dropbox.com/s/g4qr09atltdxzie/MZmine-2.21.zip?dl=0

I hope I fixed the DLL issues.

Tomas

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[jamuna risal]

Hello Tomas,

Now I can import. Thank you very much.

I really appreciate your hard work and looking forward for such a kind support in future when needed.

Have a great day and great week ahead :)

jamuna

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