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This is the cross-project mailing list for development of the open source projects
myExperiment
,
Wf4Ever
and models like
Research Objects
.
Useful resources:
myExperiment wiki
myExperiment REST API
myExperiment RDF interface
myExperiment source code at RubyForce
Wf4Ever wiki
Wf4Ever APIs
Wf4Ever github projects
Ruby API for talking to WF4Ever Transformation API
Research Object (RO) model
-- also as
OWL
myGrid wiki
Taverna developer wiki
Taverna
SCUFL2/Workflow Bundle documentation
and
SCUFL2 API
SysmoDB SEEK
RightField
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Sue Tairaku
, …
Finn Bacall
35
5/31/17
Workflow REST API service: specific query that retrieves all the workflows from certain user
Hello Finn, Thank you so much for your support! Cheers! Sue On Tue, May 30, 2017 at 6:51 PM, Finn
unread,
Workflow REST API service: specific query that retrieves all the workflows from certain user
Hello Finn, Thank you so much for your support! Cheers! Sue On Tue, May 30, 2017 at 6:51 PM, Finn
5/31/17
Finn Bacall
5/19/17
myExperiment API documentation mirror
Hi all, I have mirrored (copied & pasted) the API docs to our wiki on Github: https://github.com/
unread,
myExperiment API documentation mirror
Hi all, I have mirrored (copied & pasted) the API docs to our wiki on Github: https://github.com/
5/19/17
Alan R Williams
, …
Finn Bacall
4
1/5/17
http://www.myexperiment.org
It's back up. Thanks to John for rebooting the machine. Cheers, Finn On 05/01/2017 12:46, John
unread,
http://www.myexperiment.org
It's back up. Thanks to John for rebooting the machine. Cheers, Finn On 05/01/2017 12:46, John
1/5/17
Leandro Simões
,
Finn Bacall
3
11/20/15
myExperiment xml schema
Hello Finn, thanks for your feedback... Have a nice day. Leandro Simões Mestrando em Ciência da
unread,
myExperiment xml schema
Hello Finn, thanks for your feedback... Have a nice day. Leandro Simões Mestrando em Ciência da
11/20/15
Finn Bacall
7/8/15
Re: myExperiment workflows: "Run" option for Systo models
Hi Robert, Yes, that is possible and should be quite easy to do. Would the run link always be in the
unread,
Re: myExperiment workflows: "Run" option for Systo models
Hi Robert, Yes, that is possible and should be quite easy to do. Would the run link always be in the
7/8/15
Carole Goble
3/1/15
winning poster at Force2015 has myExperiment in it
http://figshare.com/articles/
unread,
winning poster at Force2015 has myExperiment in it
http://figshare.com/articles/
3/1/15
Carole Goble
1/13/15
DataCite citation styles
from force11 https://docs.google.com/document/d/157jlYeTa1HB0QAe2wROZwJflZiovY_NKZ3OKHxJknJU/edit#
unread,
DataCite citation styles
from force11 https://docs.google.com/document/d/157jlYeTa1HB0QAe2wROZwJflZiovY_NKZ3OKHxJknJU/edit#
1/13/15
Stian Soiland-Reyes
,
Carole Goble
2
10/14/14
DOIs from University of Manchester Library (DataCite)
All sounds promising. I bumped into Ian mulvany from eLife and he has been working on best practice
unread,
DOIs from University of Manchester Library (DataCite)
All sounds promising. I bumped into Ian mulvany from eLife and he has been working on best practice
10/14/14
Carole Goble
9/25/14
DOIs and myExperiment
Hello can we really talk about publishing workflows and not assign a DOI? or an EPIC id? I am
unread,
DOIs and myExperiment
Hello can we really talk about publishing workflows and not assign a DOI? or an EPIC id? I am
9/25/14
Carole Goble
2
8/3/14
Reuse of models and data
All I found the myexperiment talk http://www.slideshare.net/seanb/scientific-social-objects carole
unread,
Reuse of models and data
All I found the myexperiment talk http://www.slideshare.net/seanb/scientific-social-objects carole
8/3/14
Finn Bacall
6/20/14
Fwd: myExperiment feedback from Hooper Richard (rhooper@cuahsi.org): Sustaining myexperiment.org
-------- Original Message -------- Subject: myExperiment feedback from Hooper Richard (rhooper@cuahsi
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Fwd: myExperiment feedback from Hooper Richard (rhooper@cuahsi.org): Sustaining myexperiment.org
-------- Original Message -------- Subject: myExperiment feedback from Hooper Richard (rhooper@cuahsi
6/20/14
Sean Bechhofer
, …
Robert Haines
5
11/29/13
Thanks Don!
Don, Many thanks and good luck for the future! Best wishes, Rob On 29/11/2013 16:57, Don Cruickshank
unread,
Thanks Don!
Don, Many thanks and good luck for the future! Best wishes, Rob On 29/11/2013 16:57, Don Cruickshank
11/29/13
Finn Bacall
,
Alan Williams
2
11/21/13
Fwd: Interaction capture tool
On 21-Nov-13 10:27, Finn Bacall wrote: > Anyone have any thoughts about this? > > In our
unread,
Fwd: Interaction capture tool
On 21-Nov-13 10:27, Finn Bacall wrote: > Anyone have any thoughts about this? > > In our
11/21/13
Alan Williams
,
Finn Bacall
2
11/21/13
Fwd: myExperiment integration
We could add a button on the workflow page to open a window to OnlineHPC.net and load in the current
unread,
Fwd: myExperiment integration
We could add a button on the workflow page to open a window to OnlineHPC.net and load in the current
11/21/13
John Pybus
11/14/13
Testing sandbox2.myexperiment.org
Hi Everyone, The branch containing the RO-bits merged into trunk is now up and running at http://
unread,
Testing sandbox2.myexperiment.org
Hi Everyone, The branch containing the RO-bits merged into trunk is now up and running at http://
11/14/13
Carole Goble
11/11/13
Re: Fwd: URLs of workflows for publication
Sarah we are moving to DOIs for myExperiment but here is an immediate issue here for persistent URLs
unread,
Re: Fwd: URLs of workflows for publication
Sarah we are moving to DOIs for myExperiment but here is an immediate issue here for persistent URLs
11/11/13
Alan Williams
,
Finn Bacall
2
11/11/13
Fwd: Status of BioVeL issues
On 09/11/2013 13:41, Alan Williams wrote: > http://dev.mygrid.org.uk/issues/browse/MYEXP-2217 This
unread,
Fwd: Status of BioVeL issues
On 09/11/2013 13:41, Alan Williams wrote: > http://dev.mygrid.org.uk/issues/browse/MYEXP-2217 This
11/11/13
Alan Williams
10/31/13
Fwd: Re: [BioVeL] Workflows in my experiment
Hello everyone, We have some requests from BioVeL. Alan -------- Original Message -------- Subject:
unread,
Fwd: Re: [BioVeL] Workflows in my experiment
Hello everyone, We have some requests from BioVeL. Alan -------- Original Message -------- Subject:
10/31/13
Carole Goble
2
10/2/13
MyExperiment styling
Stop press. They love the BioCatalogue and biodiversitycatalogue. Usability wise. Carole Sent from my
unread,
MyExperiment styling
Stop press. They love the BioCatalogue and biodiversitycatalogue. Usability wise. Carole Sent from my
10/2/13
Carole Goble
,
Stian Soiland-Reyes
3
9/9/13
search and myexperiment with BioVeL
Stian if I was on the BioVeL theme and searched for Alan I would expect to see - the BioVeL workflows
unread,
search and myexperiment with BioVeL
Stian if I was on the BioVeL theme and searched for Alan I would expect to see - the BioVeL workflows
9/9/13
Carole Goble
,
Finn Bacall
2
9/9/13
http://www.myexperiment.org/groups/1013/workflows
On 09/09/2013 09:18, Carole Goble wrote: > > why are some workflows skinned and others not?
unread,
http://www.myexperiment.org/groups/1013/workflows
On 09/09/2013 09:18, Carole Goble wrote: > > why are some workflows skinned and others not?
9/9/13
Carole Goble
9/9/13
myexperiment biovel skinning
I have just spend an hour browsing round to find workflows in BioVeL and I can say that the BioVeL
unread,
myexperiment biovel skinning
I have just spend an hour browsing round to find workflows in BioVeL and I can say that the BioVeL
9/9/13
Carole Goble
9/9/13
http://www.myexperiment.org/groups/643/workflows?filter=USER_ID%28%2218953%22%29
I picked Giacinto's MrBayes workflow from BioVeL view and it is NOT skinned why? and is it my
unread,
http://www.myexperiment.org/groups/643/workflows?filter=USER_ID%28%2218953%22%29
I picked Giacinto's MrBayes workflow from BioVeL view and it is NOT skinned why? and is it my
9/9/13
Carole Goble
9/3/13
http://shiwa-repo.cpc.wmin.ac.uk/shiwa-repo/
from the ER Flow site http://www.erflow.eu/ carole -- Professor Carole Goble FREng FBCS CITP School
unread,
http://shiwa-repo.cpc.wmin.ac.uk/shiwa-repo/
from the ER Flow site http://www.erflow.eu/ carole -- Professor Carole Goble FREng FBCS CITP School
9/3/13
Carole Goble
8/22/13
DataONE lifecycle
Sitting in dataONE talk. MyExperiment no longer appears on the tool list. Kepler and vistrails does.
unread,
DataONE lifecycle
Sitting in dataONE talk. MyExperiment no longer appears on the tool list. Kepler and vistrails does.
8/22/13
Carole Goble
, …
Stuart Owen
4
8/6/13
Re: [wf4ever] Fwd: [FoRCnet.org] ODIN codesprint and conference at CERN in October
Hi, For SEEK we have been looking at the EZID API - http://n2t.net/ezid/doc/apidoc.html - to automate
unread,
Re: [wf4ever] Fwd: [FoRCnet.org] ODIN codesprint and conference at CERN in October
Hi, For SEEK we have been looking at the EZID API - http://n2t.net/ezid/doc/apidoc.html - to automate
8/6/13
Carole Goble
, …
Stian Soiland-Reyes
11
7/29/13
http://www.myexperiment.org/workflows
Stian Stop overthinking. Can we just DO THIS. Carole > Because it collapses anyway as soon as you
unread,
http://www.myexperiment.org/workflows
Stian Stop overthinking. Can we just DO THIS. Carole > Because it collapses anyway as soon as you
7/29/13
Carole Goble
, …
Donal K. Fellows
3
7/18/13
Example
On 18/07/2013 10:48, Sean Bechhofer wrote: > On 18 Jul 2013, at 09:22, Carole Goble wrote: >
unread,
Example
On 18/07/2013 10:48, Sean Bechhofer wrote: > On 18 Jul 2013, at 09:22, Carole Goble wrote: >
7/18/13
Carole Goble
7/10/13
Fwd: VRE infoKit
Not quite sure what this is yet.... Carole Sent from my iPhone Begin forwarded message: From: Gemma
unread,
Fwd: VRE infoKit
Not quite sure what this is yet.... Carole Sent from my iPhone Begin forwarded message: From: Gemma
7/10/13
Carole Goble
7/4/13
http://www.nature.com/protocolexchange/
When we are talking about shared methods we should refer to this Carole -- Professor Carole Goble
unread,
http://www.nature.com/protocolexchange/
When we are talking about shared methods we should refer to this Carole -- Professor Carole Goble
7/4/13