Problem with running convolve_regressors_afni

[sahar.j...@gmail.com]

Hi Everyone,

I just started using Princeton MVPA on my data. I have a problem while running the convolve_regressors_afni step. The error I got is as follows:

Error using convolve_regressors_afni>call_waver (line 281)

Waver call status = 127, response: /bin/bash: waver: command not found

Error in convolve_regressors_afni>convolve_regressors_afni_onerun (line 205)

  [shell_command infile outfile shell_response] = call_waver(currun,curcond,condvec,old_regsname,args);

Error in convolve_regressors_afni (line 126)

  [thisregs_conv created] = convolve_regressors_afni_onerun(r,thisregs,old_regsname,args,created);

I have already added afni's library into matlab and set all the afni's path to Matlab. 

I have afni's and waver working on csh shell, would it be the cause of the error because MATLAB works on bash?

I really appreciate it if anyone could help me.

Thank you so  much.

       Regards,

               Sahar

[Greg Detre]

Feed in the location of 'waver' with the AFNI_LOCATION optional parameter. Matlab seems to deal with paths in a weird way (i.e. distinct from bash), so it doesn't know where to look for 'waver.'

--
You received this message because you are subscribed to the Google Groups "Princeton MVPA Toolbox for Matlab" group.
To unsubscribe from this group and stop receiving emails from it, send an email to mvpa-toolbox...@googlegroups.com.
To post to this group, send email to mvpa-t...@googlegroups.com.
Visit this group at http://groups.google.com/group/mvpa-toolbox.
For more options, visit https://groups.google.com/d/optout.

--

-- 

Greg Detre

US: +1 617 642 3902

UK: +44 7967 024210

skype:gdetre

www.gregdetre.co.uk