Larry,
There's no real way to control that servo at bootup as the systems are resetting and checking things. Since the power and signal cut out and the processor reboots there's not much you can do about it. Putting the "Shutter Close" GCode in the bootup section is fine but it won't matter much until the system completely boots. So there's always going to be a period of time where the shutter moves around a bit.
The only way around this would be to make the shutter system more expensive and complex. Then we could possibly use a separate servo controller, or we could even use a stepper motor. Neither of those solutions would have the issue, but would cost 5x more and require a lot more wiring, power, etc.
The savior here is the projector protector, which should be installed when you're not printing. If it's always installed when not actively printing then the shutter jitter issue on bootup shouldn't be a problem.
mUVe 3D Support