Finding the correct Refseq Version ID

[Heiko Brennenstuhl]

Dear all,

I am trying to automate a script for Mutalyzer's position converter. However, sometimes I get an error that tells me that the current Refseq Version ID is not supported and I need to apply "older" Refseqs. Is there a list of Refseq and respective Version IDs that I can use to check when submitting a batch position converter job?

Best,

Heiko

[Mihai Lefter]

Dear Heiko,

Thank you for using Mutalyzer.

There is no list available. However, you can make use of the "getTranscriptsMapping" API endpoint to retrieve the transcripts that overlap with a range on a chromosome, as in the following example:

https://mutalyzer.nl/json/getTranscriptsMapping?build=hg38&chrom=chr1&pos1=100&pos2=2000000&method=-1

Best regards,

Mihai