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I just installed Musite on my Mac (OS X 10.8.3; Java version 7/update 21) and so far I have not been able to get
it to locate any phosphorylation sites. The download and installation
with the installation wizard appeared to be successful and the Musite
application runs and appears to be functioning properly. However, when I
selected the model file H.sapiens.general.ser.thr.tyr and entered the
FASTA sequence for human p53 (shown as an example in the Musite
publication, Jianjiong Gao, Jay J. Thelen, A. Keith Dunker, and Dong Xu. Musite, a Tool for Global Prediction of General and
Kinase-Specific Phosphorylation Sites. Molecular & Cellular Proteomics.
2010. 9(12):2586-600), no phosphorylation sites were found. I got the
message "Failed to classify using model H.sapiens-General-Ser and Thr"
(and the same thing for the Tyr model). Do you have any suggestions?
Thank you!