Just to confirm that I see the same behaviour, with emacs and mu/mu4e
both built from git sources. I am running the unstable branch of gentoo,
fully up to date.
I run emacs as a daemon and then emacsclient to create the frame in
which I run mu4e. Perhaps as a result, my *messages* buffer says
[mu4e] Found mu version 1.12.13-dev
[mu4e] Unexpected data from server: (:labels nil)
[mu4e] Contacts updated: 2087; total 1560
just once, on starting mu4e for the first time, but then not again.
As Tim did, I manually removed all the contents of the
/usr/local/share/emacs/site-lisp/mu4e directory and allowed the mu build
to repopulate it, to no avail.
It's only a minor annoyance for me, as the message only appears once in
my setup, but I hope this helps to track down the issue.
Luke