Hi Meira,
Thanks for flagging this! You're correct that there is a mismatch. I believe this mismatch should only affect NYCT subways and buses, who have different GTFS-RT service alert agency_ids ("MTASBWY" and "MTA NYCT", respectively) but the same static GTFS agency_id
("MTA NYCT"). Other agency_ids ("MTABC", "LI", and "MNR") should not be affected.
Unfortunately, this is a legacy issue we cannot solve quickly. If you are running into specific issues with consuming these feeds, please feel free to follow-up in this thread.
Thanks,
Dillon
Dillon Shen-Cruz (he/him)
Metropolitan Transportation Authority
Product Manager, Data and APIs