Dear MSstats Team,
I have question regarding fractionated samples and the DIANNtoMSstatsFormat converter. I fractionated a whole proteome sample into two fractions for three biological replicates, measured them by DIA and analysed the results with DIANN.
In the DIANNtoMSstatsFormat function I want to set "summaryforMultipleRows = sum" since I have fractions and not technical replicates, but it is just ignored. Is there a way to change this?
Thanks for developing this awesome package.
Best,
Tim