analyse proteins missing in 1 conditions

[Duong Trinh]

Hello,

After running group comparisons, I see quite a lot of proteins are not present in the volcano plot because their foldchanges are infinite with "oneConditionMissing" issue. Could you suggest how I should include these proteins in the analysis and final report?

Thanks

[Devon Kohler]

Hello,

There proteins could be biologically relevant, but not statistics were possible due to them being entirely missing in one of the experimental condition. You can discuss the relevance of them being missing (i.e., they are either below the limit of detection or actually not present in one condition). Hope this helps!

Devon