MSstatsTMT/groupComparisonTMT() to work on log2 transformed values.

[Rui Yang]

Hi all,

I am trying to use the groupComparisonTMT() function to compare the significant changes among groups. It seems that the default input is the output of proteinSummarization function, which I don't have.

I used the shortened input of MSstatsTMT example with some modification (book3) to test my code, but it ran error.

Can anyone here solve the problem for me?

Really appreciate it.

Rui

[Mateusz Staniak]

Hi,

what's the problem with using proteinSummarization output? How many conditions are there in your data?

Kind regards,

Mateusz Staniak