how to link each introgressed tract to the indivdiual

[Maud Duranton]

Hi everyone,

I am running simulations with Msprime to test different chromosome painting methods.

I am simulating gene flow between two populations and at the end I have a VCF file and the Treeseq file.

Using the function get-migrating_tracts() that I found in an example on line I get the starting and ending position of each tract as long as their length. However I don't know to which individual the tract belongs. I am guessing that this might be possible to know to which node the tract is related but I am struggling to find a way to do so.

Does someone have a solution?

Best,

Maud Duranton

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