msprime demography to ms command converter

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Rémi Tournebize

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Nov 6, 2020, 9:56:30 AM11/6/20
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Dear all,

I would like to convert a msprime demography into a ms command and I was wondering if such converter already existed? else, I will implement a little thingie.

Thank you!
Kind regards,
Rémi

Jerome Kelleher

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Nov 9, 2020, 11:13:40 AM11/9/20
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Hi Rémi,

I haven't used it personally, but I think this R package has some
facilities for what you want:

https://academic.oup.com/bioinformatics/article/34/16/2854/4953370

If I recall correctly, it's not *quite* converting MassMigration events
correctly (but these can't be fully expressed in ms notation anyway).

Hope this helps.

Cheers,
jerome
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