msdk-devel

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Welcome to the Mass Spectrometry Development Kit (MSDK) group!

For basic information about MSDK, please check our website.

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Gautam Saxena, … Jones, Andy3

12/5/19

any plans to support for mzindentml

Hi all, My team contributed to the jmzIdentML api and also a library of routines for manipulating

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any plans to support for mzindentml

Hi all, My team contributed to the jmzIdentML api and also a library of routines for manipulating

12/5/19

Gautam Saxena, … David Bouyssié5

4/15/18

peptide intensity in isolationWindow

The only requirement I think is to have access to the parent MS data. So if input is a raw file it

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peptide intensity in isolationWindow

The only requirement I think is to have access to the parent MS data. So if input is a raw file it

4/15/18

Gautam Saxena, … David Bouyssié5

4/11/18

Adding Serializable Word On All Classes

Thanks David, Tomas, Adam. I was going to use https://github.com/RuedigerMoeller/fast-serialization

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Adding Serializable Word On All Classes

Thanks David, Tomas, Adam. I was going to use https://github.com/RuedigerMoeller/fast-serialization

4/11/18

Gautam Saxena, Nils Hoffmann2

4/5/18

Thermo linux library for reading files

Hi Gautam, I have heard of it a while ago but lost track of it. Thanks for bringing it back up. It

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Thermo linux library for reading files

Hi Gautam, I have heard of it a while ago but lost track of it. Thanks for bringing it back up. It

4/5/18

Philip Wenig

2/16/18

MSDK/KNIME & Visualization

Hi folks, I saw that you've registered some projects for GSoC 2018. Great! Eclipse is again an

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MSDK/KNIME & Visualization

Hi folks, I saw that you've registered some projects for GSoC 2018. Great! Eclipse is again an

2/16/18

Tomas Pluskal

2/13/18

MSDK/MZmine in Google Summer of Code 2018

Hi all, MSDK (https://msdk.github.io) and MZmine (https://mzmine.github.io) will be participating

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MSDK/MZmine in Google Summer of Code 2018

Hi all, MSDK (https://msdk.github.io) and MZmine (https://mzmine.github.io) will be participating

2/13/18

Steffen Neumann, Tomas Pluskal3

1/27/18

mzTab-1.1 for metabolomics nearing stabilisation

Hi Tomas, Yes, please see the github.com/nilshoffmann link. Nils has rewritten/updated/forked the

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mzTab-1.1 for metabolomics nearing stabilisation

Hi Tomas, Yes, please see the github.com/nilshoffmann link. Nils has rewritten/updated/forked the

1/27/18

Adam Tenderholt, … David Bouyssié25

3/26/17

Google Summer of Code 2017

Hi there, I would like to add my 2 cents to the debate opposing the direct binary reading vs vendor

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Google Summer of Code 2017

Hi there, I would like to add my 2 cents to the debate opposing the direct binary reading vs vendor

3/26/17

David Bouyssié, … Tomas Pluskal8

3/24/17

mzDB converter based on MSDK

Hi David, Either this group or GitHub issue tracker are both fine for discussion. Recently, I find

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mzDB converter based on MSDK

Hi David, Either this group or GitHub issue tracker are both fine for discussion. Recently, I find

3/24/17

Tomas Pluskal, Philip Wenig2

3/8/17

MSDK accepted in GSoC 2017

Great, congrats :-). ChemClipse/OpenChrom has been also accepted, but under the umbrella of the

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MSDK accepted in GSoC 2017

Great, congrats :-). ChemClipse/OpenChrom has been also accepted, but under the umbrella of the

3/8/17

Philip Wenig, Tomas Pluskal2

1/23/17

Difference MSDK and mzJava

Strictly speaking, this is the difference: http://mzjava.expasy.org/stable/1.1.0/apidocs/index.html

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Difference MSDK and mzJava

Strictly speaking, this is the difference: http://mzjava.expasy.org/stable/1.1.0/apidocs/index.html

1/23/17

Nils Hoffmann

4/1/16

Fwd: [Psidev-ms-dev] Request for new CV Term for MSDK

FYI -------- Weitergeleitete Nachricht -------- Return-Path: <psidev-ms-dev-bounces@lists.

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Fwd: [Psidev-ms-dev] Request for new CV Term for MSDK

FYI -------- Weitergeleitete Nachricht -------- Return-Path: <psidev-ms-dev-bounces@lists.

4/1/16

Philip Wenig, … Alexander Kerner5

2/18/16

MSDK - OSGi

Hi, Yes, OSGi compatibility only requires some additional files, such as META-IF/MANIFEST.MF and

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MSDK - OSGi

Hi, Yes, OSGi compatibility only requires some additional files, such as META-IF/MANIFEST.MF and

2/18/16

Philip Wenig, Thomas F. Dyrlund3

1/4/16

Raw data / MSDK + OpenChrom

Hi Thomas, thanks for the link. It hopefully helps to unravel some of the *.wiff format mysteries.

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Raw data / MSDK + OpenChrom

Hi Thomas, thanks for the link. It hopefully helps to unravel some of the *.wiff format mysteries.

1/4/16

Nils Hoffmann, … Tomas Pluskal5

12/31/15

@author in JavaDoc comments

Hi Nils, I think it is quite a pain to maintain the @author tags, especially when lots of small

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@author in JavaDoc comments

Hi Nils, I think it is quite a pain to maintain the @author tags, especially when lots of small

12/31/15

Tomas Pluskal, Philip Wenig2

12/31/15

MSDK API

Hi Tomas, great news, thanks for the update. I wish you a successful year 2016! Cheers, Philip Am

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MSDK API

Hi Tomas, great news, thanks for the update. I wish you a successful year 2016! Cheers, Philip Am

12/31/15

Tomas Pluskal

11/24/15

MSDK in Maven Central

Hi everyone, I finished setting up the configuration to deploy MSDK artifacts into the Sonatype Open

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MSDK in Maven Central

Hi everyone, I finished setting up the configuration to deploy MSDK artifacts into the Sonatype Open

11/24/15

Thomas F. Dyrlund2

11/10/15

MS/MS feature list builder

The topic was moved to GitHub: https://github.com/msdk/msdk/issues/31 /Thomas Den fredag den 30.

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MS/MS feature list builder

The topic was moved to GitHub: https://github.com/msdk/msdk/issues/31 /Thomas Den fredag den 30.

11/10/15

Tomas Pluskal, Philip Wenig2

10/5/15

MSDK status update

Hi Thomas, thanks for the update :-). Best, Philip Am 02.10.2015 um 18:03 schrieb Tomas Pluskal: Hi

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MSDK status update

Hi Thomas, thanks for the update :-). Best, Philip Am 02.10.2015 um 18:03 schrieb Tomas Pluskal: Hi

10/5/15

wohlgemuth, … Gert Wohlgemuth3

4/3/15

adding compound informations

Hi Tomas, good point and I was misguided by the name Annotation, it honestly thought it was a Java

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adding compound informations

Hi Tomas, good point and I was misguided by the name Annotation, it honestly thought it was a Java

4/3/15

wohlgemuth, … Tomas Pluskal8

3/26/15

latest version - doesn't build

Hi, I agree with using spaces instead of tabs. I have created a format specification file for Eclipse

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latest version - doesn't build

Hi, I agree with using spaces instead of tabs. I have created a format specification file for Eclipse

3/26/15

Tomas Pluskal, … Philip Wenig32

3/6/15

MSDK website and source codes

Hi Simon, Thanks for the comments! > Regarding Andy's point about floating point precision,

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MSDK website and source codes

Hi Simon, Thanks for the comments! > Regarding Andy's point about floating point precision,

3/6/15

Tomas Pluskal

3/1/15

Tutorial for MSDK developers

Hi, I have prepared a short tutorial how to contribute your code to MSDK using the Pull Request

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Tutorial for MSDK developers

Hi, I have prepared a short tutorial how to contribute your code to MSDK using the Pull Request

3/1/15

Tomas Pluskal, … Philip Wenig9

2/20/15

MSDK license

I have in mind that PD (public domain) is in some ways incompatible with German/European laws. But we

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MSDK license

I have in mind that PD (public domain) is in some ways incompatible with German/European laws. But we

2/20/15

Philip Wenig

2/17/15

Mass Spectrometry Development Kit

I like the idea to develop a vendor-neutral generic mass spectrometry framework.

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Mass Spectrometry Development Kit

I like the idea to develop a vendor-neutral generic mass spectrometry framework.

2/17/15