Implement MRIQC tools in my own script

[Ryan Cali]

Hi,

Is there a way to only use the snr and cnr tools and not run the mriqc in its entirety? I'm looking to simply calculate snr and cnr on a T1w image within a script that I'm building and then produce some graphs. 

Cheers,

Ryan 

[Molly Ireland]

Hi Ryan,

If you pip install mriqc, you should be able to access the packages in your code editor. For example in python I used the following script:

from mriqc.qc import anatomical

The anatomical package contains the iqa metrics.

Hope that helps.