issue w/ --hmc-fsl

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Kyle Ryan

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Jun 17, 2021, 5:31:44 PM6/17/21
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Hello!

When I'm trying to run the mriqc with docker adding the flag '--hmc-fsl', I get an error claiming it is an unrecognized argument. My command is as follows (with applicable directories inputted): 

sudo docker run -it --rm -v <bids_dir>:/data:ro -v <output>:/out poldracklab/mriqc:latest --verbose-reports --no-sub --hmc-fsl /data /out participant

Let me know if there is some way I can make this work! Thanks,
Kyle Ryan

Seven Yu

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Jul 30, 2021, 3:14:39 AM7/30/21
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Hi.

After checking the updating documentation(from github's release), the author discarded FSL in MRIQC. See the following picture:
Xnip2021-07-30_15-12-34.png
By viewing #842 can the reason be found:
Xnip2021-07-30_15-13-03.png
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