consistant result of "Detected a zero-filled frame, has the original image been rotated?"

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Lu Zhao

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Oct 11, 2022, 4:42:24 PM10/11/22
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Hi,

I am a new user of the MRIQC tool. For testing, I have run MRIQC on 20 sMRI scans through docker. It is striking I got constant result "Detected a zero-filled frame, has the original image been rotated?", no matter how the real image quality is. Here I attached screenshots of the reports for cases of "good","motion" and "corrupted reconstruction". 

I used the standard commond: 
docker run -it --rm -v <input dir>:/data:ro -v  <output dir>:/out nipreps/mriqc:latest /data /out participant --participant_label  <subjID> --no-sub --verbose-reports

It looks, for me, the trained model did not work for my independent dataset. Is there any suggestion to address such issue?

Thank you very much!

Lu


Screen Shot 2022-10-11 at 1.34.45 PM.jpgScreen Shot 2022-10-11 at 1.35.08 PM.jpgScreen Shot 2022-10-11 at 1.35.22 PM.jpg


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