Hi,
I am a new user of the MRIQC tool. For testing, I have run MRIQC on 20 sMRI scans through docker. It is striking I got constant result "Detected a zero-filled frame, has the original image been rotated?", no matter how the real image quality is. Here I attached screenshots of the reports for cases of "good","motion" and "corrupted reconstruction".
I used the standard commond:
docker run -it --rm -v <input dir>:/data:ro -v <output dir>:/out nipreps/mriqc:latest /data /out participant --participant_label <subjID> --no-sub --verbose-reports
It looks, for me, the trained model did not work for my independent dataset. Is there any suggestion to address such issue?
Thank you very much!
Lu


