mriqc error on WSL2

[Lukas Van Oudenhove]

Hello,

I am trying to run MRIQC on a BIDS validated dataset on a Windows machine with WSL2 and Docker installed, using Ubuntu 20.04.

Below is my command line and the error I got.

Thanks a lot for the help!

Best wishes,

Lukas

(base) lukasvo76@DESKTOP-QEFB0UB:~$ mriqc '/mnt/c/Users/lukas/Dropbox (Personal)/Teodora_FD_meal/rawdata' '/mnt/c/Users/

lukas/Dropbox (Personal)/Teodora_FD_meal/qc' participant

210116-13:14:39,517 cli IMPORTANT:

    Running MRIQC version 0.16.0:

      * BIDS dataset path: /mnt/c/Users/lukas/Dropbox (Personal)/Teodora_FD_meal/rawdata.

      * Output folder: /mnt/c/Users/lukas/Dropbox (Personal)/Teodora_FD_meal/qc.

      * Analysis levels: ['participant'].

Process Process-2:

Traceback (most recent call last):

  File "/home/lukasvo76/anaconda3/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap

    self.run()

  File "/home/lukasvo76/anaconda3/lib/python3.8/multiprocessing/process.py", line 108, in run

    self._target(*self._args, **self._kwargs)

  File "/home/lukasvo76/anaconda3/lib/python3.8/site-packages/mriqc/cli/workflow.py", line 21, in build_workflow

    retval["workflow"] = init_mriqc_wf()

  File "/home/lukasvo76/anaconda3/lib/python3.8/site-packages/mriqc/workflows/core.py", line 17, in init_mriqc_wf

    workflow.add_nodes([fmri_qc_workflow()])

  File "/home/lukasvo76/anaconda3/lib/python3.8/site-packages/mriqc/workflows/functional.py", line 94, in fmri_qc_workflow

    iqmswf = compute_iqms()

  File "/home/lukasvo76/anaconda3/lib/python3.8/site-packages/mriqc/workflows/functional.py", line 206, in compute_iqms

    fwhm_interface = get_fwhmx()

  File "/home/lukasvo76/anaconda3/lib/python3.8/site-packages/mriqc/workflows/utils.py", line 167, in get_fwhmx

    afni_version = StrictVersion('%s.%s.%s' % Info.version())

TypeError: not enough arguments for format string

[Jason Hohmann]

I am having the same issue. Did you ever fix this?]

30508-13:38:33,509 nipype.interface WARNING:
 FSLOUTPUTTYPE environment variable is not set. Setting FSLOUTPUTTYPE=NIFTI
230508-13:38:33,529 nipype.interface WARNING:
 FSLOUTPUTTYPE environment variable is not set. Setting FSLOUTPUTTYPE=NIFTI

Process Process-2:
Traceback (most recent call last):

  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap
    self.run()
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/multiprocessing/process.py", line 108, in run
    self._target(*self._args, **self._kwargs)
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/site-packages/mriqc/cli/workflow.py", line 61, in build_workflow
    retval["workflow"] = init_mriqc_wf()
  File "<string>", line 2, in __setitem__
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/multiprocessing/managers.py", line 850, in _callmethod
    raise convert_to_error(kind, result)
multiprocessing.managers.RemoteError:
---------------------------------------------------------------------------

Traceback (most recent call last):

  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/multiprocessing/managers.py", line 243, in serve_client
    request = recv()
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/multiprocessing/connection.py", line 251, in recv
    return _ForkingPickler.loads(buf.getbuffer())
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/site-packages/traits/has_traits.py", line 1410, in __setstate__
    self.trait_set(trait_change_notify=trait_change_notify, **state)
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/site-packages/traits/has_traits.py", line 1520, in trait_set
    setattr(self, name, value)
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 330, in validate
    value = super(File, self).validate(objekt, name, value, return_pathlike=True)
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
    self.error(objekt, name, str(value))
  File "/app/apps/rhel8/python-anaconda3/2020-11/lib/python3.8/site-packages/traits/base_trait_handler.py", line 74, in error
    raise TraitError(