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Welcome to the mriqc-users mailing list!
For general documentation, please visit
mriqc.readthedocs.io
.
To report errors or request new features, please go to
https://github.com/nipreps/
mriqc/issues
.
We have recently separated the ML models (e.g., the MRIQC classifier) from the MRIQC application. The new repository is found at
https://github.com/nipreps/
mriqc-learn
Thanks for using MRIQC!
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Elisabeth Freund
2
Jun 25
cannot find mriqc_wf
I stumbled upon a solution myself. Looks like I needed to mount the working directory as a volume in
unread,
cannot find mriqc_wf
I stumbled upon a solution myself. Looks like I needed to mount the working directory as a volume in
Jun 25
Cassandra Marotta
,
Oscar Esteban
5
May 24
dwi crash report - expected file size not reached
Thanks Oscar, It looks like the previously computed files were the issue as after I deleted
unread,
dwi crash report - expected file size not reached
Thanks Oscar, It looks like the previously computed files were the issue as after I deleted
May 24
Andrea Ivan Costantino
,
Gonzalo Castro Leal
2
May 20
ValueError: Out of range float values are not JSON compliant: nan
Hi Andrea, I do not know if you still need the help. I came across this post of yours because I was
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ValueError: Out of range float values are not JSON compliant: nan
Hi Andrea, I do not know if you still need the help. I came across this post of yours because I was
May 20
Maria Beser
Apr 17
quality rating ground truths
Hi! I am looking for the quality rating ground truths of the original dataset but I can not find it.
unread,
quality rating ground truths
Hi! I am looking for the quality rating ground truths of the original dataset but I can not find it.
Apr 17
Toby
Mar 18
MP2RAGE
Hi! I am using an mp2rage sequence - and wondering how I should proceed with using MRIQC. I noticed
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MP2RAGE
Hi! I am using an mp2rage sequence - and wondering how I should proceed with using MRIQC. I noticed
Mar 18
Victoria Liu
, …
Xiaoqian Jiang
5
Mar 18
no data found, no group level report is generated
For me, it need to run all the individual ones before I can proceed to the group level On Friday 16
unread,
no data found, no group level report is generated
For me, it need to run all the individual ones before I can proceed to the group level On Friday 16
Mar 18
Dmitriy Desser
, …
jamy andy
5
Feb 14
SNR of specific ROIs
Hi Dima et al., Has there been some updates on this topic? I am also interested in extracting various
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SNR of specific ROIs
Hi Dima et al., Has there been some updates on this topic? I am also interested in extracting various
Feb 14
Jody Culham
11/23/23
Are visual plots of temporal noise normalized?
Hi, I'd like to include some plots of the temporal standard deviation output from mriqc in an
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Are visual plots of temporal noise normalized?
Hi, I'd like to include some plots of the temporal standard deviation output from mriqc in an
11/23/23
Linn Christin Bonaventure Norbom
,
Tamás Andrei Földes
3
9/7/23
documentation on how to implement mriqc-learn
I can see that there is a github issue open related to this: https://github.com/nipreps/mriqc-learn/
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documentation on how to implement mriqc-learn
I can see that there is a github issue open related to this: https://github.com/nipreps/mriqc-learn/
9/7/23
Radha
, …
Nicholas D'Cruz
8
7/10/23
RuntimeError with synthstrip
For me, increasing my swap memory did the trick. Nick On Tuesday, 20 December 2022 at 22:09:47 UTC+1
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RuntimeError with synthstrip
For me, increasing my swap memory did the trick. Nick On Tuesday, 20 December 2022 at 22:09:47 UTC+1
7/10/23
zeit problem
,
Oscar Esteban
3
5/18/23
Running MRIQC on big dataset
Dear Ruben, > But when I want to run the entire dataset on 60 cores, it takes a while to start and
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Running MRIQC on big dataset
Dear Ruben, > But when I want to run the entire dataset on 60 cores, it takes a while to start and
5/18/23
Lukas Van Oudenhove
,
Jason Hohmann
2
5/8/23
mriqc error on WSL2
I am having the same issue. Did you ever fix this?] 30508-13:38:33509 nipype.interface WARNING:
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mriqc error on WSL2
I am having the same issue. Did you ever fix this?] 30508-13:38:33509 nipype.interface WARNING:
5/8/23
alberto redolfi
3/31/23
Re: MRIQC DWI/DTI
Dear Oscar, Ok, I got it. I opened this thread because I understood that some users, for example, “
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Re: MRIQC DWI/DTI
Dear Oscar, Ok, I got it. I opened this thread because I understood that some users, for example, “
3/31/23
aredol...@gmail.com
,
Oscar Esteban
2
3/31/23
MRIQC DWI/STI
Hi Alberto, At the moment, MRIQC does not support DWI. Best, Oscar On Thu, Mar 30, 2023 at 10:09 AM
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MRIQC DWI/STI
Hi Alberto, At the moment, MRIQC does not support DWI. Best, Oscar On Thu, Mar 30, 2023 at 10:09 AM
3/31/23
Castor Shem
3/19/23
Withdrawing IQMs from Database
Hi all, I'm hoping to withdraw some IQMs from the MRIQC database. I sent a request and follow-up
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Withdrawing IQMs from Database
Hi all, I'm hoping to withdraw some IQMs from the MRIQC database. I sent a request and follow-up
3/19/23
Christina Roßmanith
1/23/23
Warning MAD=0.0
I've just processed my first data with MRIQC (docker version). Do I have to worry about warnings
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Warning MAD=0.0
I've just processed my first data with MRIQC (docker version). Do I have to worry about warnings
1/23/23
Miriam W
,
Oscar Esteban
2
1/18/23
group reports
When you run mriqc at the participant level for each point, the tool will generate corresponding json
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group reports
When you run mriqc at the participant level for each point, the tool will generate corresponding json
1/18/23
O D
11/27/22
installation with conda and minimal working example
Hello, as mentioned in my previous question: could someone post a clear and detailed step-by-step
unread,
installation with conda and minimal working example
Hello, as mentioned in my previous question: could someone post a clear and detailed step-by-step
11/27/22
O D
11/27/22
installation of mriqc with conda
Hello, could someone post a clear and detailed step-by-step method to describe how to install: https:
unread,
installation of mriqc with conda
Hello, could someone post a clear and detailed step-by-step method to describe how to install: https:
11/27/22
Lu Zhao
10/11/22
consistant result of "Detected a zero-filled frame, has the original image been rotated?"
Hi, I am a new user of the MRIQC tool. For testing, I have run MRIQC on 20 sMRI scans through docker.
unread,
consistant result of "Detected a zero-filled frame, has the original image been rotated?"
Hi, I am a new user of the MRIQC tool. For testing, I have run MRIQC on 20 sMRI scans through docker.
10/11/22
Ryan Cali
,
Molly Ireland
2
8/17/22
Implement MRIQC tools in my own script
Hi Ryan, If you pip install mriqc, you should be able to access the packages in your code editor. For
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Implement MRIQC tools in my own script
Hi Ryan, If you pip install mriqc, you should be able to access the packages in your code editor. For
8/17/22
zeit problem
, …
Oscar Esteban
9
8/17/22
MRIQC in a non-bids compliant dataset
I agree with the maintenance burden, which is even higher in open-source communities since regular
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MRIQC in a non-bids compliant dataset
I agree with the maintenance burden, which is even higher in open-source communities since regular
8/17/22
zeit problem
,
Oscar Esteban
3
8/17/22
MRIQC in parallel processing
As I said, I'm printing out the command that is executed in each process, and it is definitely
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MRIQC in parallel processing
As I said, I'm printing out the command that is executed in each process, and it is definitely
8/17/22
Yu Xuan
7/13/22
RuntimeError with Return code:1
Hello, I am working on MRIQC on a Ubuntu 18.04 desktop. I have tried to implement it in both Docker
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RuntimeError with Return code:1
Hello, I am working on MRIQC on a Ubuntu 18.04 desktop. I have tried to implement it in both Docker
7/13/22
Cristian Reyes
, …
Jadyn Park
3
6/8/22
Weird Mistake
Hi, I have the same error as yours above. Were you able to resolve it, by chance? On Saturday,
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Weird Mistake
Hi, I have the same error as yours above. Were you able to resolve it, by chance? On Saturday,
6/8/22
גד לב
5/24/22
Cross studies motion standards
Hi all, I want to examine whether some basic motion stats (FD, DVARS) in my study are high/low
unread,
Cross studies motion standards
Hi all, I want to examine whether some basic motion stats (FD, DVARS) in my study are high/low
5/24/22
Javier Martínez
, …
MacNicol, Eilidh
3
5/13/22
Has MRIQC been tested on rat brain?
You are correct: The new species flag (available in 22.0.0) takes either human or rat as an input (so
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Has MRIQC been tested on rat brain?
You are correct: The new species flag (available in 22.0.0) takes either human or rat as an input (so
5/13/22
Hasnae Ag
4/1/22
How to use mriqc_learn ?
Greetings everyone! I came into your GitHub project 'MRIQC _LEARN' (https://github.com/
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How to use mriqc_learn ?
Greetings everyone! I came into your GitHub project 'MRIQC _LEARN' (https://github.com/
4/1/22
Hasnae Ag
,
Oscar Esteban
3
3/28/22
IQMs values differ between two MRIQC containers.
Hi, Thanks for the quick answer and explanations. Hasnae Le ven. 25 mars 2022 à 09:50, Oscar Esteban
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IQMs values differ between two MRIQC containers.
Hi, Thanks for the quick answer and explanations. Hasnae Le ven. 25 mars 2022 à 09:50, Oscar Esteban
3/28/22
wenq...@gmail.com
, …
Wenjun Huang
13
3/26/22
how to use mriqc_clf in docker
Hi all, I ran the Tutorial.ipynb on on the jupyter notebooks: https://github.com/nipreps/mriqc-learn/
unread,
how to use mriqc_clf in docker
Hi all, I ran the Tutorial.ipynb on on the jupyter notebooks: https://github.com/nipreps/mriqc-learn/
3/26/22