Issues with compiling mpi4py and Python 3.10 for IntelMPI
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Michael Thomadakis
Oct 11, 2021, 12:53:35 PM10/11/21
to mpi...@googlegroups.com
Hello,
Downloading mpi4py-3.1.1.tar.gz (2.4 MB)
|████████████████████████████████| 2.4 MB 1.7 MB/s
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing wheel metadata ... done
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (PEP 517) ... error
ERROR: Command errored out with exit status 1:
command: /home/U/.conda/envs/devito_intel_2021.03/bin/python /home/U/.conda/envs/devito_intel_2021.03/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp8v0eykp2
cwd: /tmp/pip-install-ju5a_gqi/mpi4py_c525d73704954ad7aa0344c837a22619
Complete output (165 lines):
running bdist_wheel
running build
running build_src
running build_py
creating build
creating build/lib.linux-x86_64-3.10
creating build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.10/mpi4py
creating build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_core.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
creating build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/__init__.py -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/dtlib.py -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/pkl5.py -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/py.typed -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/MPI.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__init__.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__main__.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/bench.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/dl.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/run.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.10/mpi4py
creating build/lib.linux-x86_64-3.10/mpi4py/include
creating build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/futures/__init__.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/__main__.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_core.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_lib.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/aplus.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/pool.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/server.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/util/__init__.pyi -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/dtlib.pyi -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/pkl5.pyi -> build/lib.linux-x86_64-3.10/mpi4py/util
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc
MPI C++ compiler: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicpc
checking for library 'lmpe' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -llmpe -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -llmpe
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-x86_64-3.10
creating build/temp.linux-x86_64-3.10/src
creating build/temp.linux-x86_64-3.10/src/lib-pmpi
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.10/src/lib-pmpi/mpe.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
creating build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,--no-as-needed build/temp.linux-x86_64-3.10/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi/libmpe.so
checking for library 'vt-mpi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt-mpi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt-mpi
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt.mpi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt.mpi
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.10/src/lib-pmpi/vt.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,--no-as-needed build/temp.linux-x86_64-3.10/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi/libvt.so
checking for library 'vt-mpi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt-mpi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt-mpi
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt.mpi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt.mpi
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.10/src/lib-pmpi/vt-mpi.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,--no-as-needed build/temp.linux-x86_64-3.10/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi/libvt-mpi.so
checking for library 'vt-hyb' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt-hyb -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt-hyb
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt.ompi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt.ompi
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.10/src/lib-pmpi/vt-hyb.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,--no-as-needed build/temp.linux-x86_64-3.10/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi/libvt-hyb.so
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc
MPI C++ compiler: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicpc
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.10 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.10 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c src/dynload.c -o build/temp.linux-x86_64-3.10/src/dynload.o
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib build/temp.linux-x86_64-3.10/src/dynload.o -Lbuild/temp.linux-x86_64-3.10 -ldl -o build/lib.linux-x86_64-3.10/mpi4py/dl.cpython-310-x86_64-linux-gnu.so
checking for MPI compile and link ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
success!
removing: _configtest.c _configtest.o
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.10 -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: warning: libfabric.so.1, needed by /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so, not found (try using -rpath or -rpath-link)
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_strerror@FABRIC_1.0'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_tostr@FABRIC_1.0'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_fabric@FABRIC_1.1'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_dupinfo@FABRIC_1.1'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_getinfo@FABRIC_1.1'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_freeinfo@FABRIC_1.1'
failure.
removing: _configtest.c _configtest.o
error: Cannot link MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Failed building wheel for mpi4py
Failed to build mpi4py
ERROR: Could not build wheels for mpi4py which use PEP 517 and cannot be installed directly
I am trying to build mpi4py with python 3.10 and IntelMPI 2021.02
It is failing as follows (mpi4py is not yet installed in that env). See below. Any suggestions will be greatly appreciated
Thank you
$ pip install mpi4py --no-cache-dir
Collecting mpi4pyDownloading mpi4py-3.1.1.tar.gz (2.4 MB)
|████████████████████████████████| 2.4 MB 1.7 MB/s
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing wheel metadata ... done
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (PEP 517) ... error
ERROR: Command errored out with exit status 1:
command: /home/U/.conda/envs/devito_intel_2021.03/bin/python /home/U/.conda/envs/devito_intel_2021.03/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp8v0eykp2
cwd: /tmp/pip-install-ju5a_gqi/mpi4py_c525d73704954ad7aa0344c837a22619
Complete output (165 lines):
running bdist_wheel
running build
running build_src
running build_py
creating build
creating build/lib.linux-x86_64-3.10
creating build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.10/mpi4py
creating build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_core.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.10/mpi4py/futures
creating build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/__init__.py -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/dtlib.py -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/pkl5.py -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/py.typed -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/MPI.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__init__.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__main__.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/bench.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/dl.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/run.pyi -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.10/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.10/mpi4py
creating build/lib.linux-x86_64-3.10/mpi4py/include
creating build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.10/mpi4py/include/mpi4py
copying src/mpi4py/futures/__init__.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/__main__.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_core.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/_lib.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/aplus.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/pool.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/futures/server.pyi -> build/lib.linux-x86_64-3.10/mpi4py/futures
copying src/mpi4py/util/__init__.pyi -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/dtlib.pyi -> build/lib.linux-x86_64-3.10/mpi4py/util
copying src/mpi4py/util/pkl5.pyi -> build/lib.linux-x86_64-3.10/mpi4py/util
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc
MPI C++ compiler: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicpc
checking for library 'lmpe' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -llmpe -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -llmpe
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-x86_64-3.10
creating build/temp.linux-x86_64-3.10/src
creating build/temp.linux-x86_64-3.10/src/lib-pmpi
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.10/src/lib-pmpi/mpe.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
creating build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,--no-as-needed build/temp.linux-x86_64-3.10/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi/libmpe.so
checking for library 'vt-mpi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt-mpi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt-mpi
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt.mpi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt.mpi
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.10/src/lib-pmpi/vt.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,--no-as-needed build/temp.linux-x86_64-3.10/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi/libvt.so
checking for library 'vt-mpi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt-mpi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt-mpi
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt.mpi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt.mpi
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.10/src/lib-pmpi/vt-mpi.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,--no-as-needed build/temp.linux-x86_64-3.10/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi/libvt-mpi.so
checking for library 'vt-hyb' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt-hyb -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt-hyb
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -lvt.ompi -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: cannot find -lvt.ompi
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.10/src/lib-pmpi/vt-hyb.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,--no-as-needed build/temp.linux-x86_64-3.10/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.10/mpi4py/lib-pmpi/libvt-hyb.so
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc
MPI C++ compiler: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicpc
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.10 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.10 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c src/dynload.c -o build/temp.linux-x86_64-3.10/src/dynload.o
gcc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -shared -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath,/home/U/.conda/envs/devito_intel_2021.03/lib -Wl,-rpath-link,/home/U/.conda/envs/devito_intel_2021.03/lib -L/home/U/.conda/envs/devito_intel_2021.03/lib build/temp.linux-x86_64-3.10/src/dynload.o -Lbuild/temp.linux-x86_64-3.10 -ldl -o build/lib.linux-x86_64-3.10/mpi4py/dl.cpython-310-x86_64-linux-gnu.so
checking for MPI compile and link ...
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
success!
removing: _configtest.c _configtest.o
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -O2 -isystem /home/U/.conda/envs/devito_intel_2021.03/include -fPIC -I/home/U/.conda/envs/devito_intel_2021.03/include/python3.10 -c _configtest.c -o _configtest.o
icc: command line warning #10148: option '-Wno-unused-result' not supported
/data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/bin/mpiicc -pthread -B /home/U/.conda/envs/devito_intel_2021.03/compiler_compat _configtest.o -Lbuild/temp.linux-x86_64-3.10 -o _configtest
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: warning: libfabric.so.1, needed by /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so, not found (try using -rpath or -rpath-link)
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_strerror@FABRIC_1.0'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_tostr@FABRIC_1.0'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_fabric@FABRIC_1.1'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_dupinfo@FABRIC_1.1'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_getinfo@FABRIC_1.1'
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so: undefined reference to `fi_freeinfo@FABRIC_1.1'
failure.
removing: _configtest.c _configtest.o
error: Cannot link MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Failed building wheel for mpi4py
Failed to build mpi4py
ERROR: Could not build wheels for mpi4py which use PEP 517 and cannot be installed directly
Lisandro Dalcin
Oct 12, 2021, 3:32:36 AM10/12/21
to mpi...@googlegroups.com
On Mon, 11 Oct 2021 at 19:53, Michael Thomadakis <drmicha...@gmail.com> wrote:
/home/U/.conda/envs/devito_intel_2021.03/compiler_compat/ld: warning: libfabric.so.1, needed by /data/saet/U/software/x86_64/RHEL7/intel/oneapi/mpi/2021.2.0/lib/release/libmpi.so, not found (try using -rpath or -rpath-link)
There is the problem, libfabric.so is not found or missing. Looks like similar issues have shown up before with the Intel distribution. You should follow up with them.
Lisandro Dalcin
============
Senior Research Scientist
Extreme Computing Research Center (ECRC)
King Abdullah University of Science and Technology (KAUST)
http://ecrc.kaust.edu.sa/
============
Senior Research Scientist
Extreme Computing Research Center (ECRC)
King Abdullah University of Science and Technology (KAUST)
http://ecrc.kaust.edu.sa/
Michael Thomadakis
Oct 12, 2021, 9:19:46 AM10/12/21
to mpi...@googlegroups.com
Actually downgrading python to 3.8 allows us to build mpi2py.
Michael
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