For the OP...
If you're having the same issues between Windows and Linux, then that's
indication that the problems aren't platform-specific.
Lightning is doubtful, but it's not impossible, either.
I know that with Firefox, sometimes one of the things that causes this
kind of issue is Flash player, and that's a plug-in. Flash is an
unlikely culprit for Thunderbird, but also not impossible.
When you're having performance issues with a Mozilla application
(whether Thunderbird, Firefox or Seamonkey), the first step is nearly
always Safe Mode. My experience is that the large majority of issues of
this type are related to a profile, and not the application itself. For
what it's worth, if you follow any of related support newsgroups, it's
too common to see complaints, following a version release, "I just
upgraded to version x, and now it doesn't work". And there's a few that
refuse to upgrade past a certain version, because they had problems with
a particular upgrade. In the face of the majority of users who do run
the most current releases, and not having problems, that's fairly strong
evidence of problems with the individual user's installation, and in
turn, that points to profile issues.
Safe Mode is the easiest first step to check. I've also found that
sometimes, trying with a completely new profile will fix things that
Safe Mode won't. For a browser, it's fairly simple to launch a new
profile (even temporarily). For a Mail client, it's going to take more
work, especially if you use POP. However, if your mail server(s)
support(s) IMAP, then you might want to try configuring IMAP connections
in a new profile, to see how they behave. For this, I'm not suggesting
that IMAP is better (or worse) than POP -- that's a different issue. But
what I am getting at is that I think you may get better performance out
of a new profile, even if Safe Mode doesn't produce satisfactory results.
In the meantime, for both computers:
1) What extensions are you running?
2) What plugins are active?
I concur that extensions may be an issue, especially if you're seeing
issues in more than one profile.
Smith