I managed to upgrade-reinstall all of perl5 and p5- ports. No errors now. I am running
checksetup.pl again and it shows the same warnings as before.
* This is Bugzilla 4.4.1 on perl 5.18.4
* Running on FreeBSD 8.4-RELEASE-p19 FreeBSD 8.4-RELEASE-p19 #0: Mon Nov 3 17:12:38 UTC 2014
Checking perl modules...
Checking for CGI.pm (v3.51) ok: found v3.63
Checking for Digest-SHA (any) ok: found v5.95
Checking for TimeDate (v2.23) ok: found v2.24
Checking for DateTime (v0.28) ok: found v1.18
Checking for DateTime-TimeZone (v0.71) ok: found v1.83
Checking for DBI (v1.614) ok: found v1.633
Checking for Template-Toolkit (v2.22) not found
Checking for Email-Send (v2.04) ok: found v2.199
Checking for Email-MIME (v1.904) ok: found v1.928
Checking for URI (v1.37) ok: found v1.65
Checking for List-MoreUtils (v0.32) ok: found v0.402
Checking for Math-Random-ISAAC (v1.0.1) ok: found v1.004
Checking available perl DBD modules...
Checking for DBD-mysql (v4.001) ok: found v4.029
Checking for DBD-Pg (v2.7.0) not found
Checking for DBD-Oracle (v1.19) not found
Checking for DBD-SQLite (v1.29) not found
The following Perl modules are optional:
Checking for GD (v1.20) ok: found v2.56
Checking for Chart (v2.1) ok: found v2.4.8
Checking for Template-GD (any) not found
Checking for GDTextUtil (any) ok: found v0.86
Checking for GDGraph (any) ok: found v1.48
Checking for MIME-tools (v5.406) not found
Checking for libwww-perl (any) not found
Checking for XML-Twig (any) not found
Checking for PatchReader (v0.9.6) ok: found v0.9.6
Checking for perl-ldap (any) not found
Checking for Authen-SASL (any) ok: found v2.16
Checking for Net-SMTP-SSL (v1.01) not found
Checking for RadiusPerl (any) not found
Checking for SOAP-Lite (v0.712) not found
Checking for XMLRPC-Lite (v0.712) not found
Checking for JSON-RPC (any) not found
Checking for JSON-XS (v2.0) not found
Checking for Test-Taint (any) not found
Checking for HTML-Parser (v3.67) ok: found v3.71
Checking for HTML-Scrubber (any) ok: found v0.11
Checking for Encode (v2.21) ok: found v2.67
Checking for Encode-Detect (any) ok: found v1.01
Checking for Email-Reply (any) not found
Checking for HTML-FormatText-WithLinks (v0.13) not found
Checking for TheSchwartz (v1.07) not found
Checking for Daemon-Generic (any) not found
Checking for mod_perl (v1.999022) not found
Checking for Apache-SizeLimit (v0.96) not found
Checking for File-MimeInfo (any) not found
Checking for IO-stringy (any) not found
So, following the prompt to install everything?