[ INFO] [1461143745.638481523]: Loaded boxy_description robot model.[ INFO] [1461143745.638655255]: Setting Param Server with Robot Description[ INFO] [1461143745.660163773]: Robot semantic model successfully loaded.[ INFO] [1461143745.660277967]: Setting Param Server with Robot Semantic Description[ INFO] [1461143745.688028184]: Loading robot model 'boxy_description'...[ INFO] [1461143745.688116985]: No root joint specified. Assuming fixed joint*** Error in `/opt/ros/indigo/lib/moveit_setup_assistant/moveit_setup_assistant': malloc(): memory corruption: 0x00000000021ed6b0 ***Aborted (core dumped)
Can you send the generated URDF so that we can reproduce the problem?
Do other ROS tools that use URDF give a similar error? e.g. "check_urdf (your urdf file)" is a good basic checks which is provided by the system package liburdfdom-dev.
The error message means that the program failed to allocate dynamic memory because the address is tried to allocate to became invalid. It's probably due to a memory error somewhere in MoveIt or the URDF parser.