How may threads is required to run a mosaik aligner ?

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pinnintil...@gmail.com

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Apr 13, 2018, 10:47:47 AM4/13/18
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Hi

I would like to align exome dataset (PE reads,30 gb x 2) against hg38.fa . We have a server with 1 TB RAM, 4 processors with 128 threads. I tried from 10 to 100 threads (-p) still it showing me the segmentation fault.

How much threads or RAM is required for mosaik alignment process ?

Thanks!

 
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