combining replicates to call peaks

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Rajat Singhania

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May 12, 2017, 3:47:48 PM5/12/17
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Hi, I would like to combine/pool two replicates before calling peaks.  It looks like the current functionality only allows for 1 replicate/input file at a time... if someone knows how this can be done, I would be really grateful.

Thank you very much!
Rajat

Dongjun Chung

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May 18, 2017, 7:01:44 PM5/18/17
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Hi Rajat,

Yes, currently mosaics package does allow only single file for each of ChIP and Input. Easy way to combine/pool replicates might be to use linux commands to use multiple text files such as 'cat' and use them as input files for mosaics package. Hope it helps.

Thanks,
Dongjun

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Rajat Singhania

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May 19, 2017, 11:53:06 AM5/19/17
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Thanks Dongjun, that's good to know.  Rajat
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