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Hello,
I was wondering if you have a script to preprocess BAM files for single end data (aligned with BWA).
Thank you!
Regards,
Sigrid
Dongjun Chung
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Sep 29, 2012, 1:46:39 PM9/29/12
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Hi Sigrid,
mosaics does not support bam file formats as its direct input but it supports sam file formats instead. There are popular tools to convert bam files to sam files, including samtools: