Param Sweep Data Analysis

[reily...@gmail.com]

Hi everyone,

I'm trying to run a param sweep on several variables in Morpheus. My plan is to set up several runs, and obtain the data from these runs, with the x-axis plotting the variable I set up in param sweep and plotting y as the time it takes to reach a goal.

Of course, I need to tell the program when the cells reach a goal. The derivative of mean cellular displacement in respects to time should reach about 0 when it reaches the goal, so if I can get the timer to shut off when that derivative reaches 0, that would be great. Then I'd take the mean of the derivative as a data point to put on the y-axis.

So how do I take all that time data from several runs and have it plotted with my param sweep variable? how would I go about executing this?

[Walter de Back]

Hi,

Sorry for the delay - I only saw your question now.

Without going into detail on your specific problem, I think the following tutorial on how to use parameter sweep may be helpful for you:

  https://gitlab.com/wdeback/Workshop-Morpheus/blob/master/tutorial-paramsweep/README.md

Once you have your results from the ParamSweep, you can analyze it with any tool you like (e.g. MatLab, Excel, etc.) but I typically use Python notebooks for which an example is given here:

  https://gitlab.com/wdeback/Workshop-Morpheus/blob/master/tutorial-paramsweep/notebook/ParamSweep-Analysis-ToggleSwitch.ipynb

I hope that helps.

Best,

Walter

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[Эрвин Визард (Earvin Wizard)]

Thanks, ParamSweep tutorial is very helpful.

пятница, 31 января 2020 г. в 16:31:59 UTC+3, Walter de Back: