Hi Bob,
You have both options:
(A) Using a stacked Tiff - as can be create via Fiji's hyperstack
- you may carve any geometry you prefer. Any image will then be a
z-slice (bottom-to-top) of your 3D space. Make sure that you use
an 8bit Tiff image.
(B) Morpheus supports predefined circular Domains
(MorpheusModel/Space/Lattice/Domain/Circle) with a given radius,
that extends to a cylinder in a 3D model. Likely the easier
solution ;-)
Best,
Jörn
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-- -------------- Jörn Starruß Tel +49 351 463 38554 APB 1026 Technische Universität Dresden Zentrum für Informationsdienste und Hochleistungsrechnen (ZIH) Abteilung Innovative Methoden des Computing