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Morpheus user forum
User forum for questions and answers on the use of the
Morpheus modeling environment
.
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How-to
questions
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Practical questions on usage, ideally with
example model.
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Implementation questions
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Questions on how a feature is implemented.
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Bug reports
: Please include sufficient detail to reproduce the error.
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Feature requests
: Discussion of new features.
Developers may want to use the
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Эрвин Визард (Earvin Wizard)
,
Jörn Starruss
3
Aug 7
Active motion model using actine polimerization
Thank you very much! вторник, 27 июня 2023 г. в 09:47:32 UTC+3, Jörn Starruss: Dear Эрвин, the
unread,
Active motion model using actine polimerization
Thank you very much! вторник, 27 июня 2023 г. в 09:47:32 UTC+3, Jörn Starruss: Dear Эрвин, the
Aug 7
dewei “Djobi” ́
,
Jörn Starboerg
2
Jun 12
Can't launch Morpheus-gui
Dear Djobi, all binaries we provide are build for 64bit systems and depend on at least AVX support,
unread,
Can't launch Morpheus-gui
Dear Djobi, all binaries we provide are build for 64bit systems and depend on at least AVX support,
Jun 12
Schumer Clarisse
,
Lutz Brusch
2
Apr 17
Change from Morpheus:2.2.6 to 2.3.3
Hi Clarisse, true, such initial mismatch between versions may occur when a model uses a sequence of
unread,
Change from Morpheus:2.2.6 to 2.3.3
Hi Clarisse, true, such initial mismatch between versions may occur when a model uses a sequence of
Apr 17
Maya Kaul
,
Diego Jahn
5
Jan 19
installation difficulty on Ventura 13
resolved! (I think?) Fix: ran "brew doctor" again while trying to diff morpheus-functional
unread,
installation difficulty on Ventura 13
resolved! (I think?) Fix: ran "brew doctor" again while trying to diff morpheus-functional
Jan 19
Ian Wong
, …
Lutz Brusch
3
Jan 15
lack of cell motion in persistence2D example
Dear Ian, good questions, thank you. Yes, regarding motion initialization, the attached model file
unread,
lack of cell motion in persistence2D example
Dear Ian, good questions, thank you. Yes, regarding motion initialization, the attached model file
Jan 15
Megan Schupp
,
Lutz Brusch
2
5/15/22
Rho-RAC-ECM paper
Hi Megan, yes, Morpheus offers various Plugins like Mappers to do what you propose. To answer all the
unread,
Rho-RAC-ECM paper
Hi Megan, yes, Morpheus offers various Plugins like Mappers to do what you propose. To answer all the
5/15/22
Megan Schupp
,
Lutz Brusch
3
5/13/22
ECM-RHO-RAC PDE TO ODE
Hi Dr. Lutz, Thank you so much for the fast reply! I am still very new with Morpheus and I really
unread,
ECM-RHO-RAC PDE TO ODE
Hi Dr. Lutz, Thank you so much for the fast reply! I am still very new with Morpheus and I really
5/13/22
Ilya
,
Эрвин Визард
2
3/14/22
Comparison of Systems biology tools
Hello, Ilya! I'm not a part of Morpheus team, but I would note, that parameters fitting in
unread,
Comparison of Systems biology tools
Hello, Ilya! I'm not a part of Morpheus team, but I would note, that parameters fitting in
3/14/22
Эрвин Визард
2/16/22
Modeling elongated objects.
Good afternoon, dear colleagues! I was reading a paper of 2007 year from the founders of Morpheus
unread,
Modeling elongated objects.
Good afternoon, dear colleagues! I was reading a paper of 2007 year from the founders of Morpheus
2/16/22
Lucie Plazen
, …
francois el-daher
4
2/15/22
Membrane elasticity
Hi, I face a similar limtation when trying to reproduce realistic protrusions of macrophages. I am
unread,
Membrane elasticity
Hi, I face a similar limtation when trying to reproduce realistic protrusions of macrophages. I am
2/15/22
Bob van Dijk
,
Jörn Starruss
3
2/14/22
3D TIFF Domain
Hi Jörn, Thank you for your quick response, I'll take a look into it! Best, Bob Op vrijdag 11
unread,
3D TIFF Domain
Hi Jörn, Thank you for your quick response, I'll take a look into it! Best, Bob Op vrijdag 11
2/14/22
Deepa
,
Lutz Brusch
24
2/7/22
Modeling cell to cell communication
Dear Deepa, true and same for me, the OME header data seems to interfere with that single slice.
unread,
Modeling cell to cell communication
Dear Deepa, true and same for me, the OME header data seems to interfere with that single slice.
2/7/22
Эрвин Визард
,
Lutz Brusch
4
1/10/22
Visualization pictures with the output of the current MCS.
Dear Эрвин, these rendering options can only be partially adjusted through the GUI. Time stamp and
unread,
Visualization pictures with the output of the current MCS.
Dear Эрвин, these rendering options can only be partially adjusted through the GUI. Time stamp and
1/10/22
Эрвин Визард
,
Lutz Brusch
3
12/28/21
Your opinion about FitMultiCell.
Dear Lutz, Thank you for your detailed answer! I hope in the near future I will be able to adapt my
unread,
Your opinion about FitMultiCell.
Dear Lutz, Thank you for your detailed answer! I hope in the near future I will be able to adapt my
12/28/21
Эрвин Визард
,
Lutz Brusch
8
11/23/21
Constant influx of immune cells into the computational domain.
Hi, Lutz! Thank you for your detailed answer! Now I can see the problem more clear than earlier. Very
unread,
Constant influx of immune cells into the computational domain.
Hi, Lutz! Thank you for your detailed answer! Now I can see the problem more clear than earlier. Very
11/23/21
Эрвин Визард
,
Jörn Starruss
3
11/22/21
How it works: Connectivity constraints?
Dear Erwin, probably Morpheus does not use exactly the logics Roeland Marks used. We just demand the
unread,
How it works: Connectivity constraints?
Dear Erwin, probably Morpheus does not use exactly the logics Roeland Marks used. We just demand the
11/22/21
Эрвин Визард
,
Lutz Brusch
4
11/20/21
How to get motion parameters?
Lutz, thank you! It works well! понедельник, 15 ноября 2021 г. в 15:35:55 UTC+3, Lutz Brusch: Hi
unread,
How to get motion parameters?
Lutz, thank you! It works well! понедельник, 15 ноября 2021 г. в 15:35:55 UTC+3, Lutz Brusch: Hi
11/20/21
Эрвин Визард
,
Lutz Brusch
3
11/1/21
ChangeCellType: several conditions
Hi, Lutz! Thank you very much for your helpful advice and the link! It was really valuable
unread,
ChangeCellType: several conditions
Hi, Lutz! Thank you very much for your helpful advice and the link! It was really valuable
11/1/21
Deepa
,
Jörn Starruss
6
10/25/21
Building a 3D model in Morpheus
Hello Jörn, I tried by checking just the `ignore medium` icon since in teh documentation it is
unread,
Building a 3D model in Morpheus
Hello Jörn, I tried by checking just the `ignore medium` icon since in teh documentation it is
10/25/21
Эрвин Визард
,
Jörn Starruss
4
10/25/21
Conditions for performing division
Dear Jörn, Thank you very much for your answer! I will check it. And for any time limit I used such
unread,
Conditions for performing division
Dear Jörn, Thank you very much for your answer! I will check it. And for any time limit I used such
10/25/21
Deepa
,
Lutz Brusch
2
10/15/21
initial cellular configuration via poisson disc sampling
Hi Deepa, an example model with the InitPoissonDisc initialization of the cell arrangement is
unread,
initial cellular configuration via poisson disc sampling
Hi Deepa, an example model with the InitPoissonDisc initialization of the cell arrangement is
10/15/21
Bob van Dijk
,
Jörn Starruss
7
9/29/21
Morpheus 2.2.5 crashes when starting multiple jobs
Dear Jörn, Thank you for the pre-release! This version allows me to sometimes start bigger sweeps
unread,
Morpheus 2.2.5 crashes when starting multiple jobs
Dear Jörn, Thank you for the pre-release! This version allows me to sometimes start bigger sweeps
9/29/21
Suhail Alsalehi
,
Jörn Starruss
4
9/28/21
Concurrent jobs and job multi-threading
1,2 - Indeed, CPM takes ~80% of teh job time so threading is not very helpful in this case. 3 - This
unread,
Concurrent jobs and job multi-threading
1,2 - Indeed, CPM takes ~80% of teh job time so threading is not very helpful in this case. 3 - This
9/28/21
Lucie Plazen
,
Jörn Starruss
3
9/3/21
Element editor
Thank you! I'd like to use the latest version but whenever I open a file on Morpheus latest
unread,
Element editor
Thank you! I'd like to use the latest version but whenever I open a file on Morpheus latest
9/3/21
Huijing Wang
,
Jörn Starruss
2
7/5/21
Field diffusion signal behavior is not as supposed in ODE
HI Huijin, The CPM is a little sensitive to extreme values so I had to adjust some parameters
unread,
Field diffusion signal behavior is not as supposed in ODE
HI Huijin, The CPM is a little sensitive to extreme values so I had to adjust some parameters
7/5/21
Carlijn Lems
,
Jörn Starruss
4
6/8/21
Increasing diffusion coefficient speeds up CPM
Hi Calijn, Thanks to your example I could confirm the issue. We solved it along with a couple of
unread,
Increasing diffusion coefficient speeds up CPM
Hi Calijn, Thanks to your example I could confirm the issue. We solved it along with a couple of
6/8/21
Cheryl Dyck
,
Jörn Starruss
3
4/5/21
Interactive Mode causes "Fatal Error"
Hi Jörn, Thank you for looking into this. Any way I can follow up? Great program, but having a
unread,
Interactive Mode causes "Fatal Error"
Hi Jörn, Thank you for looking into this. Any way I can follow up? Great program, but having a
4/5/21
Park, Eunbi
10/16/20
Assigning values at population-level
Hi everyone, Is it possible to select a certain percentage of the cell population randomly and assign
unread,
Assigning values at population-level
Hi everyone, Is it possible to select a certain percentage of the cell population randomly and assign
10/16/20
AntiSpammer825
10/14/20
mailto:morpheus-users@googlegroups.com auf http://imc.zih.tu-dresden.de/wiki/morpheus
unread,
mailto:morpheus-users@googlegroups.com auf http://imc.zih.tu-dresden.de/wiki/morpheus
10/14/20
Annel Saavedra Hernandez
,
Walter de Back
2
9/23/20
Unable to change attributes
Hi, You may have accidentally moved the Attributes panel completely to the right such that it became
unread,
Unable to change attributes
Hi, You may have accidentally moved the Attributes panel completely to the right such that it became
9/23/20