Error while trying to make test file on Linux Cluster

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patrick....@gmail.com

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Aug 17, 2016, 4:20:43 PM8/17/16

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Hey folks,

I'm trying to install MOOSE on a Linux Cluster. I followed the instructions for a single user and seemed to get through Steps 1-3 just fine. But when I tryed to make a test file ("make -j8"), I recieved the error below. Some things I might have done wrong that I gathered from other posts:

-I didn't close and reopen my terminals before compiling libMesh.

-When I run cat /opt/moose/build from my home directory in the cluster, I don't see the version number of MOOSE.

-When I run module list from my home directory, nothing related to MOOSE pops up.

-I previously made a botched attempt to follow the multi-user instructions for a linux cluster (maybe has something to do with the overridden function errors?).

Any thoughts on where I might have gone wrong?

Many thanks,

Patrick

MOOSE Compiling C++ (in opt mode) /data/home/pshower/projects/moose/framework/src/base/EigenSystem.C...

MOOSE Compiling C++ (in opt mode) /data/home/pshower/projects/moose/framework/src/base/ComputeMarkerThread.C...

MOOSE Compiling C++ (in opt mode) /data/home/pshower/projects/moose/framework/src/base/FEProblem.C...

MOOSE Compiling C++ (in opt mode) /data/home/pshower/projects/moose/framework/src/base/BlockRestrictable.C...

MOOSE Compiling C++ (in opt mode) /data/home/pshower/projects/moose/framework/src/base/ComputeIndicatorThread.C...

MOOSE Compiling C++ (in opt mode) /data/home/pshower/projects/moose/framework/src/base/ComputeJacobianBlocksThread.C...

MOOSE Compiling C++ (in opt mode) /data/home/pshower/projects/moose/framework/src/base/ComputeNodalAuxBcsThread.C...

MOOSE Compiling C++ (in opt mode) /data/home/pshower/projects/moose/framework/src/base/AuxiliarySystem.C...

In file included from /data/home/pshower/projects/moose/framework/include/userobject/UserObjectInterface.h(21),

from /data/home/pshower/projects/moose/framework/include/materials/Material.h(27),

from /data/home/pshower/projects/moose/framework/src/base/BlockRestrictable.C(17):

/data/home/pshower/projects/moose/framework/include/userobject/UserObject.h(52): error #809: exception specification for virtual function "UserObject::~UserObject" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~UserObject();

In file included from /data/home/pshower/projects/moose/framework/include/userobject/UserObjectInterface.h(21),

from /data/home/pshower/projects/moose/framework/include/auxkernels/AuxKernel.h(23),

from /data/home/pshower/projects/moose/framework/src/base/AuxiliarySystem.C(18):

virtual ~UserObject();

In file included from /data/home/pshower/projects/moose/framework/src/base/AuxiliarySystem.C(18):

/data/home/pshower/projects/moose/framework/include/auxkernels/AuxKernel.h(72): error #809: exception specification for virtual function "AuxKernel::~AuxKernel" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~AuxKernel();

In file included from /data/home/pshower/projects/moose/framework/src/base/AuxiliarySystem.C(18):

virtual ~AuxKernel();

In file included from /data/home/pshower/projects/moose/framework/include/userobject/UserObjectInterface.h(21),

from /data/home/pshower/projects/moose/framework/include/auxkernels/AuxKernel.h(23),

from /data/home/pshower/projects/moose/framework/src/base/ComputeNodalAuxBcsThread.C(22):

virtual ~UserObject();

In file included from /data/home/pshower/projects/moose/framework/src/base/ComputeNodalAuxBcsThread.C(22):

virtual ~AuxKernel();

In file included from /data/home/pshower/projects/moose/framework/src/base/ComputeNodalAuxBcsThread.C(22):

virtual ~AuxKernel();

In file included from /data/home/pshower/projects/moose/framework/src/base/AuxiliarySystem.C(19):

/data/home/pshower/projects/moose/framework/include/auxkernels/AuxScalarKernel.h(57): error #809: exception specification for virtual function "AuxScalarKernel::~AuxScalarKernel" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~AuxScalarKernel();

In file included from /data/home/pshower/projects/moose/framework/include/userobject/UserObjectInterface.h(21),

from /data/home/pshower/projects/moose/framework/include/markers/Marker.h(23),

from /data/home/pshower/projects/moose/framework/src/base/ComputeMarkerThread.C(20):

virtual ~UserObject();

In file included from /data/home/pshower/projects/moose/framework/src/base/ComputeMarkerThread.C(20):

/data/home/pshower/projects/moose/framework/include/markers/Marker.h(56): error #809: exception specification for virtual function "Marker::~Marker" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~Marker() {}

In file included from /data/home/pshower/projects/moose/framework/include/userobject/UserObjectInterface.h(21),

from /data/home/pshower/projects/moose/framework/include/indicators/Indicator.h(22),

from /data/home/pshower/projects/moose/framework/src/base/ComputeIndicatorThread.C(19):

virtual ~UserObject();

In file included from /data/home/pshower/projects/moose/framework/include/userobject/UserObjectInterface.h(21),

from /data/home/pshower/projects/moose/framework/include/materials/Material.h(27),

from /data/home/pshower/projects/moose/framework/src/base/FEProblem.C(34):

virtual ~UserObject();

In file included from /data/home/pshower/projects/moose/framework/src/base/FEProblem.C(38):

/data/home/pshower/projects/moose/framework/include/functions/Function.h(66): error #809: exception specification for virtual function "Function::~Function" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~Function();

In file included from /data/home/pshower/projects/moose/framework/include/userobject/UserObjectInterface.h(21),

from /data/home/pshower/projects/moose/framework/include/kernels/KernelBase.h(23),

from /data/home/pshower/projects/moose/framework/include/kernels/EigenKernel.h(18),

from /data/home/pshower/projects/moose/framework/src/base/EigenSystem.C(18):

virtual ~UserObject();

In file included from /data/home/pshower/projects/moose/framework/include/kernels/EigenKernel.h(18),

from /data/home/pshower/projects/moose/framework/src/base/EigenSystem.C(18):

/data/home/pshower/projects/moose/framework/include/kernels/KernelBase.h(65): error #809: exception specification for virtual function "KernelBase::~KernelBase" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~KernelBase();

In file included from /data/home/pshower/projects/moose/framework/include/userobject/UserObjectInterface.h(21),

from /data/home/pshower/projects/moose/framework/include/kernels/KernelBase.h(23),

from /data/home/pshower/projects/moose/framework/src/base/ComputeJacobianBlocksThread.C(18):

virtual ~UserObject();

In file included from /data/home/pshower/projects/moose/framework/src/base/ComputeJacobianBlocksThread.C(18):

virtual ~KernelBase();

In file included from /data/home/pshower/projects/moose/framework/src/base/ComputeJacobianBlocksThread.C(19):

/data/home/pshower/projects/moose/framework/include/bcs/IntegratedBC.h(42): error #809: exception specification for virtual function "IntegratedBC::~IntegratedBC" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~IntegratedBC();

In file included from /data/home/pshower/projects/moose/framework/src/base/ComputeJacobianBlocksThread.C(20):

/data/home/pshower/projects/moose/framework/include/dgkernels/DGKernel.h(72): error #809: exception specification for virtual function "DGKernel::~DGKernel" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~DGKernel();

In file included from /data/home/pshower/projects/moose/framework/src/base/FEProblem.C(43):

/data/home/pshower/projects/moose/framework/include/functions/MooseParsedFunction.h(53): error #809: exception specification for virtual function "MooseParsedFunction::~MooseParsedFunction" is incompatible with that of overridden function "MeshChangedInterface::~MeshChangedInterface"

virtual ~MooseParsedFunction();

In file included from /data/home/pshower/projects/moose/framework/src/base/FEProblem.C(58):

virtual ~Marker() {}

In file included from /data/home/pshower/projects/moose/framework/src/base/FEProblem.C(72):

/data/home/pshower/projects/moose/framework/include/controls/Control.h(63): error #809: exception specification for virtual function "Control::~Control" is incompatible with that of overridden function "VectorPostprocessorInterface::~VectorPostprocessorInterface"

virtual ~Control() {}

compilation aborted for /data/home/pshower/projects/moose/framework/src/base/ComputeNodalAuxBcsThread.C (code 2)

make: *** [/data/home/pshower/projects/moose/framework/src/base/ComputeNodalAuxBcsThread.x86_64-unknown-linux-gnu.opt.lo] Error 1

make: *** Waiting for unfinished jobs....

compilation aborted for /data/home/pshower/projects/moose/framework/src/base/ComputeMarkerThread.C (code 2)

make: *** [/data/home/pshower/projects/moose/framework/src/base/ComputeMarkerThread.x86_64-unknown-linux-gnu.opt.lo] Error 1

compilation aborted for /data/home/pshower/projects/moose/framework/src/base/BlockRestrictable.C (code 2)

compilation aborted for /data/home/pshower/projects/moose/framework/src/base/ComputeIndicatorThread.C (code 2)

make: *** [/data/home/pshower/projects/moose/framework/src/base/BlockRestrictable.x86_64-unknown-linux-gnu.opt.lo] Error 1

make: *** [/data/home/pshower/projects/moose/framework/src/base/ComputeIndicatorThread.x86_64-unknown-linux-gnu.opt.lo] Error 1

compilation aborted for /data/home/pshower/projects/moose/framework/src/base/EigenSystem.C (code 2)

make: *** [/data/home/pshower/projects/moose/framework/src/base/EigenSystem.x86_64-unknown-linux-gnu.opt.lo] Error 1

compilation aborted for /data/home/pshower/projects/moose/framework/src/base/ComputeJacobianBlocksThread.C (code 2)

make: *** [/data/home/pshower/projects/moose/framework/src/base/ComputeJacobianBlocksThread.x86_64-unknown-linux-gnu.opt.lo] Error 1

compilation aborted for /data/home/pshower/projects/moose/framework/src/base/AuxiliarySystem.C (code 2)

make: *** [/data/home/pshower/projects/moose/framework/src/base/AuxiliarySystem.x86_64-unknown-linux-gnu.opt.lo] Error 1

compilation aborted for /data/home/pshower/projects/moose/framework/src/base/FEProblem.C (code 2)

make: *** [/data/home/pshower/projects/moose/framework/src/base/FEProblem.x86_64-unknown-linux-gnu.opt.lo] Error 1

Cody Permann

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Aug 17, 2016, 4:35:01 PM8/17/16

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What compiler and version are you using?

Cody

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patrick....@gmail.com

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Aug 18, 2016, 8:06:28 AM8/18/16

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Hey Cody,

Thanks for your responsiveness. I'm waiting to hear back from a system administrator, but in my modules it lists openmpi/1.6.5-intel.

Patrick

patrick....@gmail.com

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Aug 18, 2016, 11:48:13 AM8/18/16

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Cody,

The compiller I'm using is openmpi version 1.6.5. Do you know if that can handle C++11, or the other prereqs? Is that the likely culprit?

Thanks again,

Patrick

On Wednesday, August 17, 2016 at 4:35:01 PM UTC-4, Cody Permann wrote:

Kong (Non-US), Fande

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Aug 18, 2016, 11:56:02 AM8/18/16

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Hi Patrick,

Could you type in "mpicxx -v", and send back the info.

Thanks,

Fande,

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Derek Gaston

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Aug 18, 2016, 11:57:30 AM8/18/16

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Also "mpicxx -show"

Derek

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patrick....@gmail.com

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Aug 18, 2016, 12:02:57 PM8/18/16

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Hey Fande,

Thanks for the help. Here's what I got:

icpc version 14.0.3 (gcc version 4.4.7 compatibility)

patrick....@gmail.com

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Aug 18, 2016, 12:03:48 PM8/18/16

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Thanks Derek. It looks like it does confirm that compiler. Not that I know anything about anything here.

icpc -I/data/apps/openmpi/1.6.5-intel/include -pthread -L/data/apps/openmpi/1.6.5-intel/lib -lmpi_cxx -lmpi -ldl -lm -Wl,--export-dynamic -lrt -lnsl -lutil

Cody Permann

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Aug 18, 2016, 12:39:33 PM8/18/16

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That compiler doesn't meet our minimum requirements: http://mooseframework.org/getting-started/

Ask your system administrators how to access a modern compiler. We recommend "Clang" if it's available.

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patrick....@gmail.com

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Aug 18, 2016, 12:45:56 PM8/18/16

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Hey Cody,

It also looks like I can download openmpi 1.10.3. Is that any better? If not I'll find the most recent version of Clang.

Derek Gaston

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Aug 18, 2016, 12:58:36 PM8/18/16

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OpenMPI is not a compiler. It's an implementation of the Message Passing Interface (MPI) specification.

Your compiler is the Intel Compiler (ICC) version 14.0.3 backed by GCC version 4.4.7.

You need to ask your system administrator for a compiler that meets our minimum requirements of at least: GCC 4.8.4 or Clang 3.4.0 or Intel20130607

They will also need to supply you with a newly compiled version of MPI (fine if it's OpenMPI) that is compiled with that new compiler.

Derek

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patrick....@gmail.com

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Aug 18, 2016, 1:00:29 PM8/18/16

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Hey Derek,

Alright, thanks for explaining that. I'll pass all that along and see what happens.

Thanks again!

Patrick

john.m...@uconn.edu

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Aug 18, 2016, 2:30:07 PM8/18/16

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We just had the same issues on our cluster.

GCC 4.4.7 wasn't cutting it.

My hand wavy advice/:

Are you using a module system? You most likely have one. Type module list and then module avail to see what you have. Sometimes it is as easy as 'module load gcc/5.4.0' in the script you use to compile or the bashrc if you are trying to compile on your login node. We also needed to use openmpi/1.10.3
On that note, sometimes compiling on the login node can mess things up. Our problem was that our login node had quite a bit of undocumented libraries that were removed and that compiling on the login node no longer worked. This was, as far as I understand, because our login nodes had different (old) architecture than the compute nodes (so now when we called openmpi/1.10.3, it didn't work).
Sometimes you need to include the mpi specific compiler flags in your script to compile on compute nodes or bashrc to compile on login nodes these look something like this:
export \

CC=mpicc \

CXX=mpicxx \

FC=mpifort \

F90=mpif90

Best,
John

patrick....@gmail.com

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Aug 18, 2016, 2:31:59 PM8/18/16

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Hey all,

I was able to install a working compiler make the -j8, but then all the tests failed. The output of the test should be attached. Any thoughts on what's happening?

Thank you for your patience,

Patrick

On Thursday, August 18, 2016 at 12:58:36 PM UTC-4, Derek Gaston wrote:

Failed Test.rtf

patrick....@gmail.com

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Aug 18, 2016, 2:39:48 PM8/18/16

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Thanks John,

Yes, I'm on a module system and once I Ioaded the newer version of the compiler everything worked fine. I edited the bashrc as well (maybe incorrectly). The only problem is that the updated modules don't stick around when I log out and log back in to the cluster, so I'll ask my administrator about that. And even though I have the projects/moose directory and it seems populated, there aren't any moose modules when I list them.

John Mangeri

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Aug 18, 2016, 2:52:17 PM8/18/16

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Well everything doesn't work fine if the tests failed.

What version of PETSc are you using? Is that module loaded as well? Or did you compile this desperately and calling it with $PETSC_DIR?

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Cody Permann

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Aug 18, 2016, 2:58:34 PM8/18/16

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On Thu, Aug 18, 2016 at 12:39 PM <patrick....@gmail.com> wrote:

Thanks John,

Yes, I'm on a module system and once I Ioaded the newer version of the compiler everything worked fine. I edited the bashrc as well (maybe incorrectly). The only problem is that the updated modules don't stick around when I log out and log back in to the cluster,

Right! I say this all the time on the mailing list but you have to have a sane environment!.Take the time to ask your administrator how to properly edit your shell startup files. If you don't know what the means then this really applies to you. Once you can log in and log out and everything points to your new versions of your compilers, MPI libraries, PETSc libraries, python libraries etc. Then you can start building, not before. Ever minute you spend learning how to use a Unix system is a minute well spent.

Hopefully I didn't rant too much! :) Hope you get it going soon.

Cody

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Miller, Jason M

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Aug 18, 2016, 2:58:41 PM8/18/16

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Patrick,

Those error messages do not really tell us much... Can you run the following commands and report back the results.

module list

env

which gcc icc clang mpicc

mpicc -show

ldd /data/home/pshower/projects/moose/test/moose_test-opt

Those will certainly give us an idea of your working environment, and what moose_test-opt originally linked against. Chances are, when you built/installed/switched to the 'working compiler', you have as of yet, rebuilt libMesh/MOOSE/moose-test using this new compiler.

Thanks!

Jason

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patrick....@gmail.com

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Aug 18, 2016, 3:03:04 PM8/18/16

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Hey John,

Haha, good point.

I'm not at all sure but I'll try to check on those things. I followed the Linux Cluster Single User instructions, and it looks like they mention version 3.6.4. I'm not sure about your third question, but it kind of looks like the instructions address that.

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patrick....@gmail.com

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Aug 18, 2016, 3:07:14 PM8/18/16

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Hey Cody,

Yeah, I believe you. I just figured out that I need to put a few lines in the .bashrc file to make sure the same modules are available every time. So, I'm trying to get there. We'll see.

Shoot, that's hardly a unjustified rant. I wish I would have known those things yesterday.

Thanks again,

Patrick

patrick....@gmail.com

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Aug 18, 2016, 3:19:51 PM8/18/16

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Hey Jason,

Thanks for your input. I'm going to try doing everything again now that I have the proper compilers, cmake, etc. in my .bashrc file. I'll see if that makes a difference. But as of now, the attached are what those commands returned.

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mpicc -show.rtf

which gcc icc clang mpicc.rtf

env.rtf

module_list.rtf

ldd :data:home:pshower:projects:moose:test:moose_test-opt.rtf

Peterson, JW

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Aug 18, 2016, 3:32:25 PM8/18/16

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On Thu, Aug 18, 2016 at 1:19 PM, <patrick....@gmail.com> wrote:

Hey Jason,

Thanks for your input. I'm going to try doing everything again now that I have the proper compilers, cmake, etc. in my .bashrc file. I'll see if that makes a difference. But as of now, the attached are what those commands returned.

Your LD_LIBRARY_PATH (from env.sh) is... daunting. One of the things in there that is troubling is the following:

/data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4

/data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/daal/../tbb/lib/intel64_lin/gcc4.4

I don't know where these came from/if they will end up being a problem, but it means that even your new Intel compiler is still possibly using GCC4.4.

John

Miller, Jason M

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Aug 18, 2016, 3:40:20 PM8/18/16

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Patrick,

Thanks for taking the time to run through those commands.

Looks like you need to go back, and rebuild PETSc using your new compiler, then libMesh/MOOSE etc.... As I am seeing conflicts with both that older version of openmpi still being referenced, and the new one you need:

ldd /data/home/pshower/projects/moose/test/moose_test-opt\
linux-vdso.so.1 => (0x00007fff07dff000)\
libmoose_test-opt.so.0 => /data/home/pshower/projects/moose/test/lib/libmoose_test-opt.so.0 (0x00007fd51fa28000)\
libmoose-opt.so.0 => /data/home/pshower/projects/moose/framework/libmoose-opt.so.0 (0x00007fd51e263000)\
libpcre-opt.so.0 => /data/home/pshower/projects/moose/framework/contrib/pcre/libpcre-opt.so.0 (0x00007fd51e03b000)\
libice_updater-opt.so.0 => /data/home/pshower/projects/moose/framework/contrib/ice_updater/libice_updater-opt.so.0 (0x00007fd51de2b000)\
libstdc++.so.6 => /data/apps/gcc/4.9.3/lib64/libstdc++.so.6 (0x00007fd51db18000)\
libimf.so => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libimf.so (0x00007fd51d61a000)\
libsvml.so => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libsvml.so (0x00007fd51c70e000)\
libirng.so => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libirng.so (0x00007fd51c39b000)\
libcilkrts.so.5 => /data/apps/gcc/4.9.3/lib64/libcilkrts.so.5 (0x00007fd51c17f000)\
libgcc_s.so.1 => /data/apps/gcc/4.9.3/lib64/libgcc_s.so.1 (0x00007fd51bf69000)\
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fd51bd32000)\
libmesh_opt.so.0 => /data/home/pshower/projects/moose/scripts/../libmesh/installed/lib/libmesh_opt.so.0 (0x00007fd51a97d000)\
libnetcdf.so.7 => /data/home/pshower/projects/moose/scripts/../libmesh/installed/lib/libnetcdf.so.7 (0x00007fd51a631000)\
libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x00007fd51a3db000)\
libmpi_cxx.so.1 => /data/apps/openmpi/1.10.3-intel/lib/libmpi_cxx.so.1 (0x00007fd51a1c0000)\
libmpi.so.12 => /data/apps/openmpi/1.10.3-intel/lib/libmpi.so.12 (0x00007fd519eb3000)\
libopen-rte.so.12 => /data/apps/openmpi/1.10.3-intel/lib/libopen-rte.so.12 (0x00007fd519c1c000)\
libopen-pal.so.13 => /data/apps/openmpi/1.10.3-intel/lib/libopen-pal.so.13 (0x00007fd51990a000)\
libnuma.so.1 => /usr/lib64/libnuma.so.1 (0x00007fd519701000)\
libz.so.1 => /lib64/libz.so.1 (0x00007fd5194ea000)\
libtbb.so.2 => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/libtbb.so.2 (0x00007fd519294000)\
libtbbmalloc.so.2 => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/libtbbmalloc.so.2 (0x00007fd519041000)\
libpetsc.so.3.6 => /data/home/pshower/moose-compilers/petsc/petsc-3.6.4/gcc-opt/lib/libpetsc.so.3.6 (0x00007fd51744a000)\
libparmetis.so => /data/home/pshower/moose-compilers/petsc/petsc-3.6.4/gcc-opt/lib/libparmetis.so (0x00007fd5171f4000)\
libmetis.so => /data/home/pshower/moose-compilers/petsc/petsc-3.6.4/gcc-opt/lib/libmetis.so (0x00007fd516f4e000)\
libX11.so.6 => /usr/lib64/libX11.so.6 (0x00007fd516c10000)\
libmpi_f90.so.1 => /data/apps/openmpi/1.6.5-intel/lib/libmpi_f90.so.1 (0x00007fd516a0d000)\
libmpi_f77.so.1 => /data/apps/openmpi/1.6.5-intel/lib/libmpi_f77.so.1 (0x00007fd5167d6000)\
libifport.so.5 => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libifport.so.5 (0x00007fd5165a6000)\
libifcoremt.so.5 => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libifcoremt.so.5 (0x00007fd516210000)\
libiomp5.so => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libiomp5.so (0x00007fd515ecb000)\
libirc.so => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libirc.so (0x00007fd515c5f000)\
libmpi.so.1 => /data/apps/openmpi/1.6.5-intel/lib/libmpi.so.1 (0x00007fd51585f000)\
libm.so.6 => /lib64/libm.so.6 (0x00007fd5155db000)\
libdl.so.2 => /lib64/libdl.so.2 (0x00007fd5153d6000)\
librt.so.1 => /lib64/librt.so.1 (0x00007fd5151ce000)\
libnsl.so.1 => /lib64/libnsl.so.1 (0x00007fd514fb5000)\
libutil.so.1 => /lib64/libutil.so.1 (0x00007fd514db1000)\
libc.so.6 => /lib64/libc.so.6 (0x00007fd514a1d000)\
libintlc.so.5 => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libintlc.so.5 (0x00007fd5147b1000)\
/lib64/ld-linux-x86-64.so.2 (0x00007fd52026c000)\
libidn.so.11 => /lib64/libidn.so.11 (0x00007fd51457d000)\
libldap-2.4.so.2 => /lib64/libldap-2.4.so.2 (0x00007fd51432d000)\
libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x00007fd5140e9000)\
libkrb5.so.3 => /lib64/libkrb5.so.3 (0x00007fd513e02000)\
libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x00007fd513bd6000)\
libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00007fd5139d2000)\
libssl3.so => /usr/lib64/libssl3.so (0x00007fd513791000)\
libsmime3.so => /usr/lib64/libsmime3.so (0x00007fd513565000)\
libnss3.so => /usr/lib64/libnss3.so (0x00007fd513226000)\
libnssutil3.so => /usr/lib64/libnssutil3.so (0x00007fd512ff9000)\
libplds4.so => /lib64/libplds4.so (0x00007fd512df5000)\
libplc4.so => /lib64/libplc4.so (0x00007fd512bf0000)\
libnspr4.so => /lib64/libnspr4.so (0x00007fd5129b1000)\
libssh2.so.1 => /usr/lib64/libssh2.so.1 (0x00007fd512789000)\
libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00007fd51256a000)\
libifcore.so.5 => /data/apps/intel-compilers/2016u3/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/libifcore.so.5 (0x00007fd512205000)\
liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x00007fd511ff5000)\
libresolv.so.2 => /lib64/libresolv.so.2 (0x00007fd511ddb000)\
libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x00007fd511bc0000)\
libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x00007fd5119b5000)\
libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007fd5117b2000)\
libssl.so.10 => /usr/lib64/libssl.so.10 (0x00007fd511545000)\
libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x00007fd511162000)\
libXau.so.6 => /usr/lib64/libXau.so.6 (0x00007fd510f5e000)\
libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007fd510d27000)\
libselinux.so.1 => /lib64/libselinux.so.1 (0x00007fd510b07000)\
libfreebl3.so => /lib64/libfreebl3.so (0x00007fd510904000)\

Thanks!

Jason

On Thu, Aug 18, 2016 at 1:19 PM, <patrick....@gmail.com> wrote:

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patrick....@gmail.com

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Aug 18, 2016, 3:45:57 PM8/18/16

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Hey Jason,

No problem at all. You're the one doing the work. Yeah, when I log into the cluster it says it can't load (compile?) the old version of openmpi because there's a new one. So I'll try to get rid of the old version with my .bashrc file. And then I'll go through the setup again and hopefully it will cooperate.

Should I "uninstall" any of the libMesh or MOOSE or Petsc files that are currently "installed", or will they just get overwritten when I go through the setup again?

Thanks again,

Patrick

Miller, Jason M

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Aug 18, 2016, 4:20:42 PM8/18/16

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Patric,

I would certainly start with a fresh glance over the ~/.bashrc file, verify nothing but what you need is loading (openmpi-1.10.3/intel, cmake), and rebuild PETSc. Once that is complete, when you execute update_and_rebuild_libmesh.sh, that script will remove the previous built version of libMesh.

As for moose/test (assuming that is the only place you ran `make -j 8`, I would likely ask you to perform a `git clean -xfd` to clean it out:

cd /data/home/pshower/projects/moose

git clean -xfd

However, that command _will_ delete un-tracked, un-committed files. I doubt you have any changes you are trying to commit back into the MOOSE repo, but I want to warn you how that command functions. Its just short of performing an `rm -rf moose; git clone all over again`...

Jason

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Miller, Jason M

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Aug 18, 2016, 4:24:38 PM8/18/16

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I suppose I need to clarify just a tad bit on that `git clean` command...

git clean will ignore any submodule repositories you may have checked out. For example, if you run that command, it will ignore the moose/libmesh directory. So performing that command is certainly not the be-all clean-all solution.

Jason

patrick....@gmail.com

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Aug 19, 2016, 12:48:25 PM8/19/16

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Hey Jason,

Thanks for your input! I ran the git clean command and went through the setup again. Things seem better, but there were still a few errors when I ran the test. Most of them seem to be related to the number of slots I have available. Looking at the test output, would you think this is an issue with how I set up MOOSE or an issue I need to address with my use of the cluster (talking to an admin)?

Thanks again,

Patrick

For more options, visit <a href="https://urldefense.proofpoint.com/v2/url?u=h

Test output.rtf

Cody Permann

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Aug 19, 2016, 3:37:59 PM8/19/16

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Your cluster may not allow you to run MPI programs on the head node. To be clear, _none_ of the parallel tests ran in your output. This might be normal for your cluster. Talk to your admins or read the documentation about how to use the queue and compute nodes. It's probably not a problem with your setup of MOOSE.

Cody

To view this discussion on the web visit https://groups.google.com/d/msgid/moose-users/5976d9b9-6b03-402d-8999-322f738684b7%40googlegroups.com.

patrick....@gmail.com

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Aug 22, 2016, 2:39:17 PM8/22/16

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Hey Cody,

At this point, I'm able to "make" the phase field module, but when I use the export command with the path and try to use Peacock, it says the command is not found.

When I run the test, most of the errors I get relate to slots (and I'm able to run test as a submitted job, so that's encouraging), but two of the errors aren't related to slots. First, these errors said there weren't any modules named "numpy", so I installed the latest version of numpy, and now I'm getting the attached error.

Any thoughts on what the error might mean or how I could get peacock to run?

I hate to have one problem after another like this, but at least I'm learning a little bit about how linux clusters work...

Many thanks,

Patrick

Jacobian:Numpy:PyCapsule_Type Errors.rtf

Miller, Jason M

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Aug 22, 2016, 2:52:34 PM8/22/16

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Patrick,

Looks like you installed Numpy for Python 3.x, while Peacock (and the TestHarness) requires 2.7.x. Try to install Numpy for Python 2.7 instead of 3.x. It may also be that your default python is 3.0. You can verify your default version by running the following:

python --version

As for setting up your paths so that you can run `peacock` with out supply a path to it, _and_ you haven't changed anything since your first email as far as where moose is located:

export PATH=/data/home/pshower/projects/moose/gui:$PATH

Note: You will need to perform that command _each_ time you remote/open a new terminal into said machine. If you want this to be permanent, you should add that export command to your ~/.bashrc profile.

Thanks!

Jason

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patrick....@gmail.com

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Aug 24, 2016, 6:58:27 AM8/24/16

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Hey Jason,

Awesome, thanks for the help. That resolved the numpy errors. After I loaded python 2.7.3 and the appropriate numpy into my .bashrc file, I cleared out the uncommitted files like you mentioned before, went through the regualar Linux setup again, and used "make" in the phase field directory. Now I'm getting this error when I try to run peacock:

[Newton:sigma00 phase_field]$ export PATH=/data/home/pshower/projects/moose/gui:$PATH

[Newton:sigma00 phase_field]$ peacock

Traceback (most recent call last):

File "/data/home/pshower/projects/moose/gui/peacock", line 12, in <module>

raise ImportError("Cannot load either PyQt or PySide")

I read through some other threads where people got this error, but couldn't manage to figure it out. My Terminal doesn't realize the "pip" command, I didn't do any custom loading of MOOSE, and when I tried to use "module purge; module load moose-dev-clang moose-tools", the moose modules weren't available to use/install. So, here I am. Moving forward but slolwly.

Any thoughts on what I might need to do at this pint?

Many thanks,

Patrick

Miller, Jason M

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Aug 24, 2016, 10:06:22 AM8/24/16

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Patrick,

Peacock is an entirely different beast. The libraries it depends on make up 1GB out of the 1.1GB of our redistributable. It is basically why we have a redistributable. My advice is to install Miniconda, and use that to install all the necessary libraries Peacock will need (because there are at least 20):

1. install miniconda, and then execute:

2. conda install numpy scipy vtk pyyaml matplotlib pyside

Those libraries will inherently need other libraries (a lot of them), but miniconda will be able to assist with those (automatically). Be carful following through with this... Installing miniconda means obtaining yet another version of Python. That may come with other consequences. I am not sure you have sudo rights on your cluster, but I want to mention this if you do: Do not... use sudo when installing miniconda. If you find that you must use sudo, then I would consider halting and head my words of advice below.

Words of advice:

The emails you mention where folk are loading up 'moose-dev-$$$, and/or moose-tools' are from folks that have the redistributable package installed. Because you are operating within an HPC environment, we do not have such a redistributable package. Each HPC cluster is different, and thus, we will never have a package available for this type of environment.

Most people that I know, who use Peacock while also performing work on an HPC cluster machine does so by using Peacock _locally_ on their workstation (to build input files and view results) while solving problems _remotely_ using the HPC cluster. Meaning Peacock is never truly running on the HPC cluster.

But thats not to say it can not be done. Its just not normally done. The Peacock interface while operating over SSH X Forwarding, will likely stutter and be difficult to use (due to network bandwidth) like most other graphical tools when used remotely. Your milage may vary.

Good luck with all those libraries if you choose to get Peacock running remotely on your HPC cluster!

Peacock aside... I think you are done!!

Jason

patrick....@gmail.com

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Aug 24, 2016, 10:35:00 AM8/24/16

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Hey Jason,

Alright, that just opened my eyes a little bit. As of now, the only way I know to execute jobs is through Peacock. How does one use Peacock locally and execute jobs on the cluster? That sounds ideal.

I thought I would submit the Peacock -i command to the cluster and the Peacock window would pop up just like normal, except the job would hopefully run faster.

Thanks again,

Patrick

patrick....@gmail.com

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Aug 24, 2016, 10:51:00 AM8/24/16

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Hey Jason,

By running Peacock "locally", do you mean just running it on a desktop or logging into the cluster and running it on your head node (?) instead of submitting it as a job?

Thanks for your patience in educating me,

Patrick

[Newton:sigma00 phase_field]$ peacock

Traceback (most recent call last):

File "/data/home/pshower/projects/moose/gui/peacock", line 46, in <module>

from PostprocessorWidget import *

File "/data/home/pshower/projects/moose/gui/gui/PostprocessorWidget.py", line 16, in <module>

import numpy, csv

File "/data/apps/numpy/1.11.0-python2.7.3/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/__init__.py", line 180, in <module>

from . import add_newdocs

File "/data/apps/numpy/1.11.0-python2.7.3/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/add_newdocs.py", line 13, in <module>

from numpy.lib import add_newdoc

File "/data/apps/numpy/1.11.0-python2.7.3/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/lib/__init__.py", line 8, in <module>

from .type_check import *

File "/data/apps/numpy/1.11.0-python2.7.3/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/lib/type_check.py", line 11, in <module>

import numpy.core.numeric as _nx

File "/data/apps/numpy/1.11.0-python2.7.3/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/core/__init__.py", line 14, in <module>

from . import multiarray

ImportError: /data/apps/numpy/1.11.0-python2.7.3/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/numpy/core/multiarray.so: undefined symbol: PyUnicodeUCS2_AsUTF8String

On Wednesday, August 24, 2016 at 10:06:22 AM UTC-4, jason.miller wrote:

patrick....@gmail.com

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Aug 24, 2016, 10:57:28 AM8/24/16

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Sorry, I think I found what I needed: http://mooseframework.org/wiki/CommandLine/

On Wednesday, August 24, 2016 at 10:06:22 AM UTC-4, jason.miller wrote:

Jun-li Lin

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Feb 10, 2017, 11:45:54 AM2/10/17

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Hi all,

I also encountered errors while trying to compile the moose test on a linux cluster.

I read through this post but still not sure how to fix it.

For the installation I followed the "single user cluster setup ( http://mooseframework.org/wiki/ClusterInstructions/ClusterSetupSingleUser/ )" and every step is successful.

I have posted the error below,

Linking Library /projects/arts/jlin43/moose/framework/libmoose-opt.la...

Linking Executable /projects/arts/jlin43/moose/framework/contrib/exodiff/exodiff...

/usr/bin/ld: skipping incompatible /lib/libgcc_s.so.1 when searching for libgcc_s.so.1

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag.isra.53':

ED_SystemInterface.C:(.text+0x1b3): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o: In function `(anonymous namespace)::parseExcludeTimes(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::vector<int, std::allocator<int> >&)':

ED_SystemInterface.C:(.text+0x23ab): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x2841): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x2861): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x293f): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x295b): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o:ED_SystemInterface.C:(.text+0x2975): more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' follow

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o: In function `SystemInterface::Parse_Command_File()':

ED_SystemInterface.C:(.text+0x2fea): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

ED_SystemInterface.C:(.text+0x3499): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x34b0): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x3574): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

ED_SystemInterface.C:(.text+0x379a): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x38c6): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x3c1a): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x3d65): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x40a2): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x40eb): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x4147): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x4347): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x4690): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x475e): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o:ED_SystemInterface.C:(.text+0x47ac): more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' follow

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o: In function `SystemInterface::Parse_Command_File()':

ED_SystemInterface.C:(.text+0x492d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x49ca): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x4a47): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x4bcc): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x4c6f): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x4c86): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

ED_SystemInterface.C:(.text+0x4ee4): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x4f4b): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x4fa8): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x5163): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x51f9): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x529b): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x52bf): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x5310): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x53a7): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x53cb): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x54a4): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x54c8): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x555d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x5581): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x5617): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x563b): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x56d0): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x56f4): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x5789): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x57ad): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x58dc): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x5900): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x5a27): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x5b19): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x5cf8): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x5f16): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x60ec): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x62ab): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x649f): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o:ED_SystemInterface.C:(.text+0x668e): more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)' follow

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o: In function `SystemInterface::Parse_Command_File()':

ED_SystemInterface.C:(.text+0x67d5): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x686e): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x688e): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x68db): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x6972): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x6996): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x6a7c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x6a9c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x6b29): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x6b49): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x6c47): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text+0x6c67): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x6d59): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o: In function `SystemInterface::parse_options(int, char**)':

ED_SystemInterface.C:(.text+0x85fb): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

ED_SystemInterface.C:(.text+0x8917): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text+0x925d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

ED_SystemInterface.C:(.text+0x92e1): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

ED_SystemInterface.C:(.text+0x956d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

ED_SystemInterface.C:(.text+0x961e): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o: In function `(anonymous namespace)::Parse_Variables(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::basic_ifstream<char, std::char_traits<char> >&, bool&, Tolerance&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::vector<Tolerance, std::allocator<Tolerance> >&, int)':

ED_SystemInterface.C:(.text.unlikely+0xee): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x107): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x124): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x565): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o:ED_SystemInterface.C:(.text.unlikely+0x57c): more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const' follow

ED_SystemInterface.C:(.text.unlikely+0x600): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x621): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x638): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x67a): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x72d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)'

ED_SystemInterface.C:(.text.unlikely+0x9fb): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0xa26): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0xaf5): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0xb41): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)'

ED_SystemInterface.C:(.text.unlikely+0xb96): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0xbbf): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0xc0e): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)'

ED_SystemInterface.C:(.text.unlikely+0xcd6): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0xd73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0xe10): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0xeae): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0xf4b): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o:ED_SystemInterface.C:(.text.unlikely+0xfe8): more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)' follow

ED_SystemInterface.C:(.text.unlikely+0x10b3): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x10d2): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x1128): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x11b4): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x11d5): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x14a7): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x14c8): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x14df): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x1563): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1584): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x159b): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x1621): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1642): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x1659): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x16e3): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1704): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x171b): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x179e): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x17bf): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x17d6): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x185c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x187d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x1894): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x1918): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1939): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x1950): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x19e1): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1a29): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1a4a): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

ED_SystemInterface.C:(.text.unlikely+0x1bb8): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1c0e): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1c64): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1cb0): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

ED_SystemInterface.C:(.text.unlikely+0x1d00): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o:ED_SystemInterface.C:(.text.unlikely+0x1d50): more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)' follow

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/ED_SystemInterface.x86_64-unknown-linux-gnu.opt.o: In function `_GLOBAL__sub_I_ED_SystemInterface.C':

ED_SystemInterface.C:(.text.startup+0x3d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/GetLongOpt.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag.isra.25':

GetLongOpt.C:(.text+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/GetLongOpt.x86_64-unknown-linux-gnu.opt.o: In function `GetLongOption::~GetLongOption()':

GetLongOpt.C:(.text+0xfa): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/GetLongOpt.x86_64-unknown-linux-gnu.opt.o: In function `GetLongOption::parse(int, char* const*)':

GetLongOpt.C:(.text+0x8d6): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x8dd): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x96e): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x975): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x9fc): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0xd3e): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0xd45): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0xd50): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x1114): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x111b): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x1134): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x113b): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x1146): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x13a6): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

GetLongOpt.C:(.text+0x13d9): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

GetLongOpt.C:(.text+0x1448): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

GetLongOpt.C:(.text+0x1494): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

GetLongOpt.C:(.text+0x1500): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exodiff.x86_64-unknown-linux-gnu.opt.o: In function `(anonymous namespace)::get_int_size(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':

exodiff.C:(.text+0xa1): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exodiff.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag.isra.54':

exodiff.C:(.text+0x1bc): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exodiff.x86_64-unknown-linux-gnu.opt.o: In function `bool (anonymous namespace)::exodiff<int>(ExoII_Read<int>&, ExoII_Read<int>&)':

exodiff.C:(.text+0x1396): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

exodiff.C:(.text+0x13ba): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

exodiff.C:(.text+0x4895): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exodiff.x86_64-unknown-linux-gnu.opt.o: In function `_GLOBAL__sub_I_exodiff.C':

exodiff.C:(.text.startup+0x64): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exodiff.x86_64-unknown-linux-gnu.opt.o: In function `main':

exodiff.C:(.text.startup+0x2cd): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)'

exodiff.C:(.text.startup+0x2f1): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

exodiff.C:(.text.startup+0x503): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned long)'

exodiff.C:(.text.startup+0x532): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

exodiff.C:(.text.startup+0x548): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

exodiff.C:(.text.startup+0x604): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

exodiff.C:(.text.startup+0x62a): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)'

exodiff.C:(.text.startup+0x63d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)'

exodiff.C:(.text.startup+0x3a93): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_entity.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag.isra.70':

exo_entity.C:(.text+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_entity.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10Exo_Entity12Load_ResultsB5cxx11Eiidi':

exo_entity.C:(.text+0xe83): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0xf01): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0xf7c): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x10b4): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x10c3): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x11bc): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

exo_entity.C:(.text+0x12fd): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

exo_entity.C:(.text+0x18d8): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x193b): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x1950): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x1c59): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_entity.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10Exo_Entity15Load_AttributesB5cxx11Ei':

exo_entity.C:(.text+0x1d4f): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x1dd4): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x1e3f): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x1f6a): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x1f79): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x205c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

exo_entity.C:(.text+0x2218): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x227a): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x228f): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x237a): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_entity.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10Exo_Entity12Load_ResultsB5cxx11Eii':

exo_entity.C:(.text+0x24b6): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x2534): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x25a5): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x26d6): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x26e5): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text+0x27dd): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

exo_entity.C:(.text+0x28a4): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

exo_entity.C:(.text+0x2a10): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x2a72): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x2a87): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_entity.C:(.text+0x2b74): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_entity.x86_64-unknown-linux-gnu.opt.o: In function `Exo_Entity::internal_load_params()':

exo_entity.C:(.text+0x2f39): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_entity.x86_64-unknown-linux-gnu.opt.o: In function `Exo_Entity::~Exo_Entity()':

exo_entity.C:(.text+0x503): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_entity.x86_64-unknown-linux-gnu.opt.o: In function `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::~basic_stringbuf()':

exo_entity.C:(.text._ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev[_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED5Ev]+0x3): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text._ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev[_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED5Ev]+0x3): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_entity.C:(.text._ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev[_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED5Ev]+0x45): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/side_set.x86_64-unknown-linux-gnu.opt.o: In function `Side_Set<int>::~Side_Set()':

side_set.C:(.text._ZN8Side_SetIiED0Ev[_ZN8Side_SetIiED5Ev]+0x13): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/side_set.x86_64-unknown-linux-gnu.opt.o: In function `Side_Set<long>::~Side_Set()':

side_set.C:(.text._ZN8Side_SetIlED0Ev[_ZN8Side_SetIlED5Ev]+0x13): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_block.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag.isra.26':

exo_block.C:(.text+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_block.x86_64-unknown-linux-gnu.opt.o: In function `Exo_Block<int>::~Exo_Block()':

exo_block.C:(.text._ZN9Exo_BlockIiED0Ev[_ZN9Exo_BlockIiED5Ev]+0x13): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_block.x86_64-unknown-linux-gnu.opt.o: In function `Exo_Block<long>::~Exo_Block()':

exo_block.C:(.text._ZN9Exo_BlockIlED0Ev[_ZN9Exo_BlockIlED5Ev]+0x13): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_block.x86_64-unknown-linux-gnu.opt.o: In function `Exo_Block<int>::entity_load_params()':

exo_block.C:(.text._ZN9Exo_BlockIiE18entity_load_paramsEv[_ZN9Exo_BlockIiE18entity_load_paramsEv]+0xaa): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_block.x86_64-unknown-linux-gnu.opt.o: In function `Exo_Block<long>::entity_load_params()':

exo_block.C:(.text._ZN9Exo_BlockIlE18entity_load_paramsEv[_ZN9Exo_BlockIlE18entity_load_paramsEv]+0xaa): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_block.x86_64-unknown-linux-gnu.opt.o: In function `_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev':

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0xcc): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0x151): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0x1bc): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0x2f0): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0x303): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0x478): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0x4db): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0x4ef): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_block.C:(.text._ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIiE17Load_ConnectivityB5cxx11Ev]+0x582): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exo_block.x86_64-unknown-linux-gnu.opt.o: In function `_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev':

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0xcc): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0x151): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0x1bc): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0x2f0): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0x303): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0x478): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0x4db): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0x4ef): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exo_block.C:(.text._ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev[_ZN9Exo_BlockIlE17Load_ConnectivityB5cxx11Ev]+0x582): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/FileInfo.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag.isra.22':

FileInfo.C:(.text+0x93): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/FileInfo.x86_64-unknown-linux-gnu.opt.o: In function `FileInfo::FileInfo(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':

FileInfo.C:(.text+0x293): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

FileInfo.C:(.text+0x2b7): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

FileInfo.C:(.text+0x2c7): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'

FileInfo.C:(.text+0x337): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/FileInfo.x86_64-unknown-linux-gnu.opt.o: In function `FileInfo::set_filename(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':

FileInfo.C:(.text+0x7d5): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/FileInfo.x86_64-unknown-linux-gnu.opt.o: In function `FileInfo::set_filename(char const*)':

FileInfo.C:(.text+0x93f): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/FileInfo.x86_64-unknown-linux-gnu.opt.o: In function `_ZNK8FileInfo9extensionB5cxx11Ev':

FileInfo.C:(.text+0x971): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_last_of(char const*, unsigned long, unsigned long) const'

FileInfo.C:(.text+0x98f): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_last_of(char const*, unsigned long, unsigned long) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/FileInfo.x86_64-unknown-linux-gnu.opt.o: In function `_ZNK8FileInfo8pathnameB5cxx11Ev':

FileInfo.C:(.text+0xa40): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_last_of(char const*, unsigned long, unsigned long) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/FileInfo.x86_64-unknown-linux-gnu.opt.o: In function `_ZNK8FileInfo8tailnameB5cxx11Ev':

FileInfo.C:(.text+0xac0): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_last_of(char const*, unsigned long, unsigned long) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/FileInfo.x86_64-unknown-linux-gnu.opt.o: In function `_ZNK8FileInfo8basenameB5cxx11Ev':

FileInfo.C:(.text+0xb72): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::rfind(char, unsigned long) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/SL_tokenize.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag.isra.24':

SL_tokenize.C:(.text+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/SL_tokenize.x86_64-unknown-linux-gnu.opt.o: In function `SLIB::tokenize(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&)':

SL_tokenize.C:(.text+0x2b4): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

SL_tokenize.C:(.text+0x31f): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

SL_tokenize.C:(.text+0x46c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_mutate(unsigned long, unsigned long, char const*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/create_file.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag.isra.69':

create_file.C:(.text+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/create_file.x86_64-unknown-linux-gnu.opt.o: In function `std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::operator=(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)':

create_file.C:(.text._ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_[_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_]+0x7c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

create_file.C:(.text._ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_[_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_]+0xe0): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

create_file.C:(.text._ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_[_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_]+0xf7): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

create_file.C:(.text._ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_[_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_]+0x10e): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

create_file.C:(.text._ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_[_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_]+0x125): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/create_file.x86_64-unknown-linux-gnu.opt.o:create_file.C:(.text._ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_[_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_]+0x13c): more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' follow

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/stringx.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag.isra.17':

stringx.C:(.text+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/stringx.x86_64-unknown-linux-gnu.opt.o: In function `chop_whitespace(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&)':

stringx.C:(.text+0x3b4): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::resize(unsigned long, char)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/stringx.x86_64-unknown-linux-gnu.opt.o: In function `extract_token(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, char const*)':

stringx.C:(.text+0x402): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_first_not_of(char const*, unsigned long, unsigned long) const'

stringx.C:(.text+0x425): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

stringx.C:(.text+0x46d): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_first_of(char const*, unsigned long, unsigned long) const'

stringx.C:(.text+0x4ca): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_first_not_of(char const*, unsigned long, unsigned long) const'

stringx.C:(.text+0x4ed): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

stringx.C:(.text+0x557): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

stringx.C:(.text+0x591): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_erase(unsigned long, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/node_set.x86_64-unknown-linux-gnu.opt.o: In function `Node_Set<int>::~Node_Set()':

node_set.C:(.text._ZN8Node_SetIiED0Ev[_ZN8Node_SetIiED5Ev]+0x13): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/node_set.x86_64-unknown-linux-gnu.opt.o: In function `Node_Set<long>::~Node_Set()':

node_set.C:(.text._ZN8Node_SetIlED0Ev[_ZN8Node_SetIlED5Ev]+0x13): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag.isra.59':

exoII_read.C:(.text+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<int>::Display_Stats(std::ostream&) const':

exoII_read.C:(.text._ZNK10ExoII_ReadIiE13Display_StatsERSo[_ZNK10ExoII_ReadIiE13Display_StatsERSo]+0x4c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<long>::Display_Stats(std::ostream&) const':

exoII_read.C:(.text._ZNK10ExoII_ReadIlE13Display_StatsERSo[_ZNK10ExoII_ReadIlE13Display_StatsERSo]+0x4c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<int>::Display(std::ostream&) const':

exoII_read.C:(.text._ZNK10ExoII_ReadIiE7DisplayERSo[_ZNK10ExoII_ReadIiE7DisplayERSo]+0x4c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<long>::Display(std::ostream&) const':

exoII_read.C:(.text._ZNK10ExoII_ReadIlE7DisplayERSo[_ZNK10ExoII_ReadIlE7DisplayERSo]+0x4c): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIiE9File_NameB5cxx11EPKc':

exoII_read.C:(.text._ZN10ExoII_ReadIiE9File_NameB5cxx11EPKc[_ZN10ExoII_ReadIiE9File_NameB5cxx11EPKc]+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev':

exoII_read.C:(.text._ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev]+0xb9): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev]+0x127): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev]+0x12e): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev]+0x135): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev]+0x183): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIiE22Load_Nodal_CoordinatesB5cxx11Ev]+0x26b): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii':

exoII_read.C:(.text._ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii]+0x167): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii]+0x1d5): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii]+0x1dc): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii]+0x1e3): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii]+0x231): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIiE18Load_Nodal_ResultsB5cxx11Eii]+0x2d5): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei':

exoII_read.C:(.text._ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei]+0x90): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei]+0xe3): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei]+0xea): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei]+0xf1): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei]+0x142): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIiE19Load_Global_ResultsB5cxx11Ei]+0x2b1): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIlE9File_NameB5cxx11EPKc':

exoII_read.C:(.text._ZN10ExoII_ReadIlE9File_NameB5cxx11EPKc[_ZN10ExoII_ReadIlE9File_NameB5cxx11EPKc]+0x73): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev':

exoII_read.C:(.text._ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev]+0xb9): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev]+0x127): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev]+0x12e): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev]+0x135): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev]+0x183): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev[_ZN10ExoII_ReadIlE22Load_Nodal_CoordinatesB5cxx11Ev]+0x26b): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii':

exoII_read.C:(.text._ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii]+0x167): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii]+0x1d5): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii]+0x1dc): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii]+0x1e3): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii]+0x231): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii[_ZN10ExoII_ReadIlE18Load_Nodal_ResultsB5cxx11Eii]+0x2d5): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei':

exoII_read.C:(.text._ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei]+0x90): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei]+0xe3): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei]+0xea): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei]+0xf1): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei]+0x142): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei[_ZN10ExoII_ReadIlE19Load_Global_ResultsB5cxx11Ei]+0x2b1): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev':

exoII_read.C:(.text._ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev]+0x48): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev]+0xc9): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev]+0x131): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev]+0x1a9): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev]+0x1b0): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIlE10Close_FileB5cxx11Ev]+0x2de): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<long>::~ExoII_Read()':

exoII_read.C:(.text._ZN10ExoII_ReadIlED2Ev[_ZN10ExoII_ReadIlED5Ev]+0xbf): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIlED2Ev[_ZN10ExoII_ReadIlED5Ev]+0x12e): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIlED2Ev[_ZN10ExoII_ReadIlED5Ev]+0x193): undefined reference to `operator delete[](void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<long>::~ExoII_Read()':

exoII_read.C:(.text._ZN10ExoII_ReadIlED0Ev[_ZN10ExoII_ReadIlED5Ev]+0x13): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev':

exoII_read.C:(.text._ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev]+0x48): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev]+0xc9): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev]+0x131): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev]+0x1a9): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev]+0x1b0): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev[_ZN10ExoII_ReadIiE10Close_FileB5cxx11Ev]+0x2de): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<int>::~ExoII_Read()':

exoII_read.C:(.text._ZN10ExoII_ReadIiED2Ev[_ZN10ExoII_ReadIiED5Ev]+0xbf): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIiED2Ev[_ZN10ExoII_ReadIiED5Ev]+0x12e): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIiED2Ev[_ZN10ExoII_ReadIiED5Ev]+0x193): undefined reference to `operator delete[](void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<int>::~ExoII_Read()':

exoII_read.C:(.text._ZN10ExoII_ReadIiED0Ev[_ZN10ExoII_ReadIiED5Ev]+0x13): undefined reference to `operator delete(void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm':

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0x44): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0xcb): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0xd2): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0x138): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0x1d1): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0x1d8): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0x1df): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0x1eb): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIiE21Global_to_Block_LocalB5cxx11EmRiRm]+0x304): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm':

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0x44): undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0xcb): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0xd2): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0x138): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0x1d1): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0x1d8): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0x1df): undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0x1eb): undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >'

exoII_read.C:(.text._ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm[_ZNK10ExoII_ReadIlE21Global_to_Block_LocalB5cxx11EmRiRm]+0x304): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<long>::Get_Init_Data()':

exoII_read.C:(.text._ZN10ExoII_ReadIlE13Get_Init_DataEv[_ZN10ExoII_ReadIlE13Get_Init_DataEv]+0xeb): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE13Get_Init_DataEv[_ZN10ExoII_ReadIlE13Get_Init_DataEv]+0x48e): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE13Get_Init_DataEv[_ZN10ExoII_ReadIlE13Get_Init_DataEv]+0x51f): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE13Get_Init_DataEv[_ZN10ExoII_ReadIlE13Get_Init_DataEv]+0x5a2): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE13Get_Init_DataEv[_ZN10ExoII_ReadIlE13Get_Init_DataEv]+0x18d3): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE13Get_Init_DataEv[_ZN10ExoII_ReadIlE13Get_Init_DataEv]+0x1c9f): undefined reference to `operator delete[](void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc':

exoII_read.C:(.text._ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc]+0x36): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

exoII_read.C:(.text._ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc]+0x118): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc]+0x136): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)'

exoII_read.C:(.text._ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc]+0x1a4): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc]+0x1ac): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

exoII_read.C:(.text._ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIlE9Open_FileB5cxx11EPKc]+0x1f0): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `ExoII_Read<int>::Get_Init_Data()':

exoII_read.C:(.text._ZN10ExoII_ReadIiE13Get_Init_DataEv[_ZN10ExoII_ReadIiE13Get_Init_DataEv]+0xe9): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE13Get_Init_DataEv[_ZN10ExoII_ReadIiE13Get_Init_DataEv]+0x48e): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE13Get_Init_DataEv[_ZN10ExoII_ReadIiE13Get_Init_DataEv]+0x51f): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE13Get_Init_DataEv[_ZN10ExoII_ReadIiE13Get_Init_DataEv]+0x5a2): undefined reference to `operator delete[](void*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE13Get_Init_DataEv[_ZN10ExoII_ReadIiE13Get_Init_DataEv]+0x18bb): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE13Get_Init_DataEv[_ZN10ExoII_ReadIiE13Get_Init_DataEv]+0x1c7f): undefined reference to `operator delete[](void*, unsigned long)'

/projects/arts/jlin43/moose/framework/contrib/exodiff/.libs/exoII_read.x86_64-unknown-linux-gnu.opt.o: In function `_ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc':

exoII_read.C:(.text._ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc]+0x36): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const'

exoII_read.C:(.text._ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc]+0x110): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc]+0x12e): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)'

exoII_read.C:(.text._ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc]+0x19c): undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const'

exoII_read.C:(.text._ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc]+0x1a4): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

exoII_read.C:(.text._ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc[_ZN10ExoII_ReadIiE9Open_FileB5cxx11EPKc]+0x1f0): undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_erase(unsigned long, unsigned long)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::getline<char, std::char_traits<char>, std::allocator<char> >(std::basic_istream<char, std::char_traits<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::thread::_State::~_State()@GLIBCXX_3.4.22'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::basic_istream<char, std::char_traits<char> >& std::operator>><char, std::char_traits<char>, std::allocator<char> >(std::basic_istream<char, std::char_traits<char> >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::rfind(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_stringstream()@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)())@GLIBCXX_3.4.22'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::runtime_error::runtime_error(char const*)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::copy(char*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::logic_error::logic_error(char const*)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `vtable for std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `VTT for std::__cxx11::basic_istringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::substr(unsigned long, unsigned long) const@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_mutate(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_last_of(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::operator=(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_istringstream<char, std::char_traits<char>, std::allocator<char> >::basic_istringstream(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::_Ios_Openmode)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_first_of(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::_M_sync(char*, unsigned long, unsigned long)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `vtable for std::__cxx11::basic_istringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find_first_not_of(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `VTT for std::__cxx11::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `typeinfo for std::thread::_State@GLIBCXX_3.4.22'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::runtime_error::runtime_error(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21'

/projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so: undefined reference to `operator delete(void*, unsigned long)@CXXABI_1.3.9'

collect2: error: ld returned 1 exit status

make: *** [/projects/arts/jlin43/moose/framework/contrib/exodiff/exodiff] Error 1

-------------------------------------------------------------------------------------------------------------------------------------------

Here is my module list,

Currently Loaded Modulefiles:

1) torque/6.0.2 3) env/taub 5) mvapich2/2.2-gcc-6.2.0 7) cmake/3.6.2 9) git/1.7

2) moab/9.0.2 4) gcc/6.2.0 6) openmpi/2.0.1-gcc-6.2.0 8) vim/7.3

and my env,

MANPATH=/usr/local/git-1.7/share/man:/usr/local/vim-7.3-el6/share/man:/usr/local/mpi/openmpi/2.0.1/gcc/6.2.0/share/man:/usr/local/mpi/mvapich2/2.2/gcc/6.2.0/share/man:/usr/local/gcc/6.2.0/share/man:/usr/local/torque-releases/torque-6.0.2-1469811694_d9a3483/share/man:/usr/local/share/man:/man:/usr/local/sysman:/usr/share/man:/usr/local/moab-releases/moab-9.0.2-1469837953_f87b286-el6/man

HOSTNAME=golubh3

SHELL=/bin/bash

TERM=xterm

HISTSIZE=1000

TMPDIR=/tmp

DISTARCH=el6-x86_64

LIBRARY_PATH=/usr/local/gcc/6.2.0/lib64:/usr/local/gcc/6.2.0/lib

QTDIR=/usr/lib64/qt-3.3

QTINC=/usr/lib64/qt-3.3/include

USER=jlin43

LD_LIBRARY_PATH=/usr/local/git-1.7/lib:/usr/local/mpi/openmpi/2.0.1/gcc/6.2.0/lib:/usr/local/mpi/mvapich2/2.2/gcc/6.2.0/lib:/usr/local/gcc/6.2.0/lib/gcc/x86_64-pc-linux-gnu/6.2.0:/usr/local/gcc/6.2.0/lib64:/usr/local/gcc/6.2.0/lib:/usr/local/torque-releases/torque-6.0.2-1469811694_d9a3483/lib:/usr/local/mpc-1.0.1/lib:/usr/local/mpfr-3.1.1/lib:/usr/local/gmp-5.0.5/lib

LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:

CPATH=/usr/local/gcc/6.2.0/include

MAIL=/var/spool/mail/jlin43

PATH=/usr/local/git-1.7/bin:/usr/local/vim-7.3-el6/bin:/usr/local/cmake/3.6.2/bin:/usr/local/mpi/openmpi/2.0.1/gcc/6.2.0/bin:/usr/local/mpi/mvapich2/2.2/gcc/6.2.0/bin:/usr/local/gcc/6.2.0/bin:/usr/local/torque-releases/torque-6.0.2-1469811694_d9a3483/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin:/usr/local/moab-releases/moab-9.0.2-1469837953_f87b286-el6/bin:/home/jlin43/bin

C_INCLUDE_PATH=/usr/local/torque-releases/torque-6.0.2-1469811694_d9a3483/include

F90=mpif90

PWD=/projects/arts/jlin43/moose/test

_LMFILES_=/usr/local/modulefiles/torque/6.0.2:/usr/local/modulefiles/moab/9.0.2:/usr/local/modulefiles/env/taub:/usr/local/modulefiles/gcc/6.2.0:/usr/local/modulefiles/mvapich2/2.2-gcc-6.2.0:/usr/local/modulefiles/openmpi/2.0.1-gcc-6.2.0:/usr/local/modulefiles/cmake/3.6.2:/usr/local/modulefiles/vim/7.3:/usr/local/modulefiles/git/1.7

PACKAGES_DIR=/home/jlin43/moose-compilers

MOABHOMEDIR=/var/spool/moab

MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles:/usr/apps/modulefiles:/usr/local/modulefiles

LOADEDMODULES=torque/6.0.2:moab/9.0.2:env/taub:gcc/6.2.0:mvapich2/2.2-gcc-6.2.0:openmpi/2.0.1-gcc-6.2.0:cmake/3.6.2:vim/7.3:git/1.7

F77=mpif77

CXX=mpicxx

HISTCONTROL=ignoredups

SHLVL=1

HOME=/home/jlin43

DIST=el6

FC=mpif90

LOGNAME=jlin43

QTLIB=/usr/lib64/qt-3.3/lib

CVS_RSH=/usr/bin/ssh

MODULESHOME=/usr/share/Modules

LESSOPEN=||/usr/bin/lesspipe.sh %s

ARCH=gcc

CC=mpicc

DISPLAY=

PETSC_DIR=/home/jlin43/moose-compilers/petsc/petsc-3.6.4/gcc-opt

G_BROKEN_FILENAMES=1

BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*`

}

_=/bin/env

OLDPWD=/projects/arts/jlin43/moose

Any help is appreciated!

Jun-li Lin

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Feb 10, 2017, 11:51:53 AM2/10/17

to moose-users

Followed on the last post - not sure why it only shows half of the message that I wrote.

Here is my module list,

Currently Loaded Modulefiles:

1) torque/6.0.2 3) env/taub 5) mvapich2/2.2-gcc-6.2.0 7) cmake/3.6.2 9) git/1.7

2) moab/9.0.2 4) gcc/6.2.0 6) openmpi/2.0.1-gcc-6.2.0 8) vim/7.3

my evn,

HOSTNAME=golubh3

SHELL=/bin/bash

TERM=xterm

HISTSIZE=1000

TMPDIR=/tmp

DISTARCH=el6-x86_64

LIBRARY_PATH=/usr/local/gcc/6.2.0/lib64:/usr/local/gcc/6.2.0/lib

QTDIR=/usr/lib64/qt-3.3

OLDPWD=/projects/arts/jlin43/moose

QTINC=/usr/lib64/qt-3.3/include

USER=jlin43

LS_COLORS=rs=0:di=01

CPATH=/usr/local/gcc/6.2.0/include

MAIL=/var/spool/mail/jlin43

C_INCLUDE_PATH=/usr/local/torque-releases/torque-6.0.2-1469811694_d9a3483/include

F90=mpif90

PWD=/projects/arts/jlin43/moose/test

PACKAGES_DIR=/home/jlin43/moose-compilers

MOABHOMEDIR=/var/spool/moab

MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles:/usr/apps/modulefiles:/usr/local/modulefiles

LOADEDMODULES=torque/6.0.2:moab/9.0.2:env/taub:gcc/6.2.0:mvapich2/2.2-gcc-6.2.0:openmpi/2.0.1-gcc-6.2.0:cmake/3.6.2:vim/7.3:git/1.7

F77=mpif77

CXX=mpicxx

HISTCONTROL=ignoredups

SHLVL=1

HOME=/home/jlin43

DIST=el6

FC=mpif90

LOGNAME=jlin43

QTLIB=/usr/lib64/qt-3.3/lib

CVS_RSH=/usr/bin/ssh

MODULESHOME=/usr/share/Modules

LESSOPEN=

ARCH=gcc

CC=mpicc

DISPLAY=

PETSC_DIR=/home/jlin43/moose-compilers/petsc/petsc-3.6.4/gcc-opt

G_BROKEN_FILENAMES=1

BASH_FUNC_module()=() { eval `/usr/bin/modulecmd bash $*`

}

_=/bin/env

Any help is appreciated!

Miller, Jason M

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Feb 10, 2017, 12:01:26 PM2/10/17

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Jun-li,

Your module list contains two MPI wrappers in it:

Currently Loaded Modulefiles:

1) torque/6.0.2 3) env/taub 5) mvapich2/2.2-gcc-6.2.0 7) cmake/3.6.2 9) git/1.7

2) moab/9.0.2 4) gcc/6.2.0 6) openmpi/2.0.1-gcc-6.2.0 8) vim/7.3

And it seems the error/s may be related to .o files in 'moose/framework/contrib', which might have been previously built using one of those MPI wrappers while this round was trying to use another.

The first thing you need to do, is choose only one MPI wrapper. Either of those should work. But I am betting because you are on a cluster, `mvapich2` is the correct one. Once you solve that issue, you will want to 'clean out' the .o files and start fresh. You can do this by running either; `git clean -xfd` from the root directory of your repository, or by running; `make clobberall` in your application directory. However! Those two commands have the potential to remove untracked files in your repo. So be sure you have committed any changes (if you have any) before running either of those two commands.

After cleaning out your repo, you will need to rebuild libMesh, and then moose, moose/test.

Let us know how that goes!

Jason

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Jun-li Lin

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Feb 13, 2017, 2:44:21 PM2/13/17

to moose-users

Hi Jason,

I choose to go with `mvapich2` and it works - I am able to compile the moose test and have passed all the tests.

The terminal keep giving the warning,

/usr/bin/ld: skipping incompatible /lib/libgcc_s.so.1 when searching for libgcc_s.so.1

while compiling the moose test - but I guess it is fine to ignore it?

Thanks so much for the help - I really appreciate it!

Jun-li

Miller, Jason M

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Feb 13, 2017, 4:33:13 PM2/13/17

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Jun-li,

Its possible there are still some stale .o files hanging around that were built using the wrong compiler. In your case, the older system version of GCC and not newer version 6.2 which you have loaded via modules. And it is exodiff where the warnings are coming from. The following command will tell us where exodiff linked:

ldd /projects/arts/jlin43/moose/framework/contrib/exodiff/exodiff

Please run the above command and report the results...

Thanks!

Jason

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Jun-li Lin

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Feb 13, 2017, 4:41:42 PM2/13/17

to moose-users

Hi Jason,

Sure I have posted the result by running ldd /projects/arts/jlin43/moose/framework/contrib/exodiff/exodiff,

linux-vdso.so.1 => (0x00007fff45d38000)

libgcc_s.so.1 => /usr/local/gcc/6.2.0/lib64/libgcc_s.so.1 (0x00007f322d5f3000)

libmesh_opt.so.0 => /projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libmesh_opt.so.0 (0x00007f322c56a000)

libnetcdf.so.7 => /projects/arts/jlin43/moose/scripts/../libmesh/installed/lib/libnetcdf.so.7 (0x00007f322c21f000)

libhdf5_hl.so.6 => /usr/lib64/libhdf5_hl.so.6 (0x00007f322bfd5000)

libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x00007f322bd80000)

libhdf5.so.6 => /usr/lib64/libhdf5.so.6 (0x00007f322b798000)

libglpk.so.0 => /usr/lib64/libglpk.so.0 (0x00007f322b4cd000)

libz.so.1 => /lib64/libz.so.1 (0x00007f322b2b7000)

libpetsc.so.3.6 => /home/jlin43/moose-compilers/petsc/petsc-3.6.4/gcc-opt/lib/libpetsc.so.3.6 (0x00007f3229edc000)

libparmetis.so => /home/jlin43/moose-compilers/petsc/petsc-3.6.4/gcc-opt/lib/libparmetis.so (0x00007f3229c9e000)

libmetis.so => /home/jlin43/moose-compilers/petsc/petsc-3.6.4/gcc-opt/lib/libmetis.so (0x00007f3229a27000)

libX11.so.6 => /usr/lib64/libX11.so.6 (0x00007f32296ea000)

libmpifort.so.12 => /usr/local/mpi/mvapich2/2.2/gcc/6.2.0/lib/libmpifort.so.12 (0x00007f32294b4000)

libgfortran.so.3 => /usr/local/gcc/6.2.0/lib64/libgfortran.so.3 (0x00007f322918e000)

libquadmath.so.0 => /usr/local/gcc/6.2.0/lib64/libquadmath.so.0 (0x00007f3228f4f000)

libgomp.so.1 => /usr/local/gcc/6.2.0/lib64/libgomp.so.1 (0x00007f3228d21000)

libmpicxx.so.12 => /usr/local/mpi/mvapich2/2.2/gcc/6.2.0/lib/libmpicxx.so.12 (0x00007f3228b00000)

libmpi.so.12 => /usr/local/mpi/mvapich2/2.2/gcc/6.2.0/lib/libmpi.so.12 (0x00007f3228420000)

libgpfs.so => /usr/lib64/libgpfs.so (0x00007f322820b000)

libnuma.so.1 => /usr/lib64/libnuma.so.1 (0x00007f3228000000)

libibmad.so.5 => /usr/lib64/libibmad.so.5 (0x00007f3227de2000)

librdmacm.so.1 => /usr/lib64/librdmacm.so.1 (0x00007f3227bc9000)

libibumad.so.3 => /usr/lib64/libibumad.so.3 (0x00007f32279c1000)

libibverbs.so.1 => /usr/lib64/libibverbs.so.1 (0x00007f32277aa000)

libdl.so.2 => /lib64/libdl.so.2 (0x00007f32275a5000)

librt.so.1 => /lib64/librt.so.1 (0x00007f322739d000)

libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f3227180000)

libstdc++.so.6 => /usr/local/gcc/6.2.0/lib64/libstdc++.so.6 (0x00007f3226deb000)

libm.so.6 => /lib64/libm.so.6 (0x00007f3226b67000)

libc.so.6 => /lib64/libc.so.6 (0x00007f32267d3000)

libidn.so.11 => /lib64/libidn.so.11 (0x00007f32265a0000)

libldap-2.4.so.2 => /lib64/libldap-2.4.so.2 (0x00007f322634f000)

libgssapi_krb5.so.2 => /lib64/libgssapi_krb5.so.2 (0x00007f322610a000)

libkrb5.so.3 => /lib64/libkrb5.so.3 (0x00007f3225e23000)

libk5crypto.so.3 => /lib64/libk5crypto.so.3 (0x00007f3225bf7000)

libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00007f32259f2000)

libssl3.so => /usr/lib64/libssl3.so (0x00007f32257af000)

libsmime3.so => /usr/lib64/libsmime3.so (0x00007f3225582000)

libnss3.so => /usr/lib64/libnss3.so (0x00007f3225241000)

libnssutil3.so => /usr/lib64/libnssutil3.so (0x00007f3225015000)

libplds4.so => /lib64/libplds4.so (0x00007f3224e11000)

libplc4.so => /lib64/libplc4.so (0x00007f3224c0b000)

libnspr4.so => /lib64/libnspr4.so (0x00007f32249cd000)

libssh2.so.1 => /usr/lib64/libssh2.so.1 (0x00007f32247a5000)

libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00007f3224585000)

/lib64/ld-linux-x86-64.so.2 (0x00007f322d80b000)

libnl.so.1 => /lib64/libnl.so.1 (0x00007f3224332000)

liblber-2.4.so.2 => /lib64/liblber-2.4.so.2 (0x00007f3224123000)

libresolv.so.2 => /lib64/libresolv.so.2 (0x00007f3223f08000)

libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x00007f3223cee000)

libkrb5support.so.0 => /lib64/libkrb5support.so.0 (0x00007f3223ae3000)

libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007f32238df000)

libssl.so.10 => /usr/lib64/libssl.so.10 (0x00007f3223672000)

libcrypto.so.10 => /usr/lib64/libcrypto.so.10 (0x00007f322328d000)

libXau.so.6 => /usr/lib64/libXau.so.6 (0x00007f322308a000)

libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007f3222e53000)

libselinux.so.1 => /lib64/libselinux.so.1 (0x00007f3222c33000)

libfreebl3.so => /lib64/libfreebl3.so (0x00007f3222a30000)

Thanks!

Jun-li

Miller, Jason M

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Feb 13, 2017, 4:51:20 PM2/13/17

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Thanks!

Well it looks like exodiff linked to the proper junk. I would take those warnings in stride. Somewhere, somehow, the linker _tried_ to link to the wrong versions of GCC, but ultimately did the right thing in the end...

Honestly, if you wanted this solved 100% you might need to speak with the system administrator to see if they can track down why your binaries might have been trying to link to /usr/lib/ rather than /usr/local/

Sorry I can't be of more help!

Jason

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Jun-li Lin

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Feb 13, 2017, 5:20:43 PM2/13/17

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Hi Jason,

Sure I will speak with the admin to figure this out.

Oh please dont say that - your comments are really helpful to me, and I really appreciate it.

Thanks,

Jun-li

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