can I use rpm value on monocle?

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Jun 19, 2019, 4:30:31 PM6/19/19

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I am new to scRNAseq analysis and just found out about monocle.

I have a large dataset from a paper, raw data (~340 fastq files) and processed data with rpm values.

I can do alignment and cufflinks on those fastq files.. but it will take forever to just fastqdump those files

can I use rpm values for monocle? has anyone tried using monocle with rpm values?

any help would be much appreciated!

thanks

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