error of find_gene_modules

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May 28, 2021, 2:37:25 PM5/28/21

to Monocle 3 users

try to find the gene modules, but get error as following

pr_test_res <- graph_test(my.cds.s1, neighbor_graph="principal_graph", cores=4)

pr_deg_ids <- row.names(subset(pr_test_res, q_value < 0.05))

gene_module_df <- find_gene_modules(my.cds.s1[pr_deg_ids,], resolution=0.001)

Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :

'data' must be of a vector type, was 'NULL'

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Oct 2, 2021, 1:12:05 AM10/2/21

to Monocle 3 users

same problem here, please help. thanks

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Mar 2, 2022, 3:25:36 PM3/2/22

to Monocle 3 users

Same problem

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Jul 4, 2022, 9:47:27 PM7/4/22

to Monocle 3 users

same problem, anybody can help with this?

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Sep 20, 2022, 5:40:43 PM9/20/22

to Monocle 3 users

Did any one find a solution for this? Thanks

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