Hi,
In repository there is no configuration file, by default (without configuration file) Mona start with all protocols and their default configurations.
You can change it in creating a ini file with the same name that your starting executable.

Following a configuration sample file:
;MonaServer.ini
socketBufferSize = 114688
[RTMFP]
port = 1985
keepAlivePeer = 10
keepAliveServer = 15
[logs]
name=log
directory=C:/MonaServer/logs