FFT Protein Docking - Rank by Score or Energy?

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Andrew Orry

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Jan 4, 2018, 2:07:29 PM1/4/18
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Q. 
I have run the Fast Fourier Transform Protein Protein docking method and I want to select some conformations for refinement. Should I rank by Energy or Score?
A.
‘Score' is the initial FFT based score, ener is after rescoring with more sophisticated energy function. Latter should be used for ranking.
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