Writing FFT Protein-Protein docking results to PDB.

[Andrew Orry]

Q. I have undertaken the FFT Protein-Protein docking protocol and I want to write some of the top hits to PDB. How to do this?

A.

Here is a script you can paste into the ICM terminal which will write out the first 10 docked conformations to PDB format:

for i=1,10 # set to  first 10
load object dockedPoses .COMPLEX
  transform a_2:3 dockedPoses .trans[i]
write pdb a_dockob. "Rank" + String($i)
delete a_dockob.
endfor