Hope you do well and had a nice weekend.
I got a question about the Feature-based molecular job, it was done. But I would like to view all library hits, there was some error: There was an error retrieving the result data for block "main" of workflow type "FEATURE-BASED-MOLECULAR-NETWORKING".
Also, the MolnetEnhancer job was failed, the error is as follows:
GNPS request success: True
Traceback (most recent call last):
File "/data/ccms-gnps/tools/molnetenhancer/release_22/molnetenhancer.py", line 75, in <module>
main()
File "/data/ccms-gnps/tools/molnetenhancer/release_22/molnetenhancer.py", line 35, in main
ms2lda_gnps_job_id=args.gnps_ms2lda_job, nap_job_id=args.nap)
File "/data/ccms-gnps/tools/molnetenhancer/release_22/molnetenhancer.py", line 49, in process
SMILES_csv, out_dict = add_Chemical_Info(gnpslibfile, output_directory, nap_ID=nap_job_id, Derep_job_ID=dereplicator_job_id, Varquest_job_ID=varquest_job_id)
File "/data/ccms-gnps/tools/molnetenhancer/release_22/chemClass2Network.py", line 121, in add_Chemical_Info
out = unique_smiles(matches)
File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pyMolNetEnhancer/molnetenhancer.py", line 192, in unique_smiles
df.SMILES = df.SMILES.str.replace(' ', '')
File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pandas/core/generic.py", line 5270, in __getattr__
return object.__getattribute__(self, name)
File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pandas/core/accessor.py", line 187, in __get__
accessor_obj = self._accessor(obj)
File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pandas/core/strings.py", line 2041, in __init__
self._inferred_dtype = self._validate(data)
File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pandas/core/strings.py", line 2098, in _validate
raise AttributeError("Can only use .str accessor with string values!")
AttributeError: Can only use .str accessor with string values!
Tool execution terminates abnormally with exit code [1]
I am confused about it. Hope you could give me a suggestion, thank you so much.
Best wishes,
Ting