Question about FBMN job

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Ting Chen

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Apr 27, 2021, 2:20:03 AM4/27/21
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Dear all, 

Hope you do well and had a nice weekend. 

I got a question about the Feature-based molecular job, it was done. But I would like to view all library hits, there was some error: There was an error retrieving the result data for block "main" of workflow type "FEATURE-BASED-MOLECULAR-NETWORKING". 

Also, the MolnetEnhancer job was failed, the error is as follows:

GNPS request success: True Traceback (most recent call last): File "/data/ccms-gnps/tools/molnetenhancer/release_22/molnetenhancer.py", line 75, in <module> main() File "/data/ccms-gnps/tools/molnetenhancer/release_22/molnetenhancer.py", line 35, in main ms2lda_gnps_job_id=args.gnps_ms2lda_job, nap_job_id=args.nap) File "/data/ccms-gnps/tools/molnetenhancer/release_22/molnetenhancer.py", line 49, in process SMILES_csv, out_dict = add_Chemical_Info(gnpslibfile, output_directory, nap_ID=nap_job_id, Derep_job_ID=dereplicator_job_id, Varquest_job_ID=varquest_job_id) File "/data/ccms-gnps/tools/molnetenhancer/release_22/chemClass2Network.py", line 121, in add_Chemical_Info out = unique_smiles(matches) File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pyMolNetEnhancer/molnetenhancer.py", line 192, in unique_smiles df.SMILES = df.SMILES.str.replace(' ', '') File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pandas/core/generic.py", line 5270, in __getattr__ return object.__getattribute__(self, name) File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pandas/core/accessor.py", line 187, in __get__ accessor_obj = self._accessor(obj) File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pandas/core/strings.py", line 2041, in __init__ self._inferred_dtype = self._validate(data) File "/data/ccms-gnps/tools/miniconda3_gamma/envs/molnetenhancer/lib/python3.7/site-packages/pandas/core/strings.py", line 2098, in _validate raise AttributeError("Can only use .str accessor with string values!") AttributeError: Can only use .str accessor with string values! Tool execution terminates abnormally with exit code [1]

I am confused about it. Hope you could give me a suggestion, thank you so much. 
Best wishes, 
Ting

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