ClassyFire and MotifDB annotations missing

[Thomas Lawson]

Hi GNPS,

I have been running the Classic Molecular Networking worfklow on the https://gnps.ucsd.edu web server. Then using MS2LDA MotifDB, Dereplicator+ and

Molnetenhance.

However it looks like I am no longer getting any ClassyFire annotations or hits to MotifDB. See ID=9ca7bcc50f9a48e4b87f9b8334b30254

Which is strange as I was getting hits last week. Is there perhaps a known issue causing this?

Kind regards,

Tom

[Thomas Lawson]

Hi all,

Noting that if I try to re-run the MS2LDA_MOTIFDB workflow now I get the following error

File["/scratch/ccms-gnps/f743b92a9aae464b802115e76a8c1c44/ms2lda_motifdb"].mkdirs() returned false.

Is there some maintenance going on?

ID=f743b92a9aae464b802115e76a8c1c44

[Jason Alcano]

Hi Thomas,

 I had the same problem yesterday. I can get results today. But still Classyfire annotations are missing after MolNetEnhancer workflow. I get a graphML file with "no matches" under CF_superclass and other columns under Classyfire.

How about on your end? Did you resolve it already?

[Thomas Lawson]

Hi Jason,

I can get results today - but like you - the ClassyFire annotations are still missing. I wonder if there is an external web call that is no longer working to the ClassyFire API...

Similar issue with MS2LDA MassMotifDB hits.

Tom

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