quesetione about how to convert Bruker MS data

[Pinglin Li]

Hi, I want to convert MS data from Bruker facility for GNPS calculation, I am suggested to use Compassxport software for that, but I do not know how to intall it on my Win7 system, and how to use it to covert the Bruker MS data. Can anyone help me? Thanks.

Forest, 

visiting scholar in Gerwick lab, SIO

[TJ Ling 凌铁军]

Hello, Pinglin Li,

Normally there is a tool of "processwithmethod" in Bruker DataAnalysis to convert raw data into mzXML file, which is for analysis on GNPS.

Good Luck.

[Vanessa Phelan]

Hi Pinglin Li-

Documentation for Bruker data conversion is in the GNPS documentation here: https://bix-lab.ucsd.edu/display/Public/Data+Conversion+to+.mzXML

Alternatively, see the attached pdf for general instructions.

If you have issues, I suggest that you set up an appointment directly with someone in the Dorrestein lab.

Best wishes,
Vanessa