Installation on buckethead

Lukasz Kaczmraczyk

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Oct 25, 2021, 2:02:16 PM10/25/21

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Hello,

Have you get error with gfortran of buckethead? Or is only me?

==> Installing netlib-scalapack-2.1.0-mvtsabocone2ppyci7sebdktbcfwgtx3

==> No binary for netlib-scalapack-2.1.0-mvtsabocone2ppyci7sebdktbcfwgtx3 found: installing from source

==> Fetching file:///home/staff/lk58p/mofem_install/mofem_mirror/_source-cache/archive/61/61d9216cf81d246944720cfce96255878a3f85dec13b9351f1fa0fd6768220a6.tgz

######################################################################## 100.0%

==> netlib-scalapack: Executing phase: 'cmake'

==> Error: ProcessError: Command exited with status 1:

'cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/home/staff/lk58p/mofem_install/spack/opt/spack/linux-centos7-sandybridge/gcc-9.3.0/netlib-scalapack-2.1.0-mvtsabocone2ppyci7sebdktbcfwgtx3' '-DCMAKE_BUILD_TYPE:STRING=Release' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF' '-DCMAKE_INSTALL_RPATH:STRING=/home/staff/lk58p/mofem_install/spack/opt/spack/linux-centos7-sandybridge/gcc-9.3.0/netlib-scalapack-2.1.0-mvtsabocone2ppyci7sebdktbcfwgtx3/lib;/home/staff/lk58p/mofem_install/spack/opt/spack/linux-centos7-sandybridge/gcc-9.3.0/netlib-scalapack-2.1.0-mvtsabocone2ppyci7sebdktbcfwgtx3/lib64;/home/staff/lk58p/mofem_install/spack/opt/spack/linux-centos7-sandybridge/gcc-9.3.0/openblas-0.3.12-uneqj3vkoendtqclj5ltrmwbfcrt7igq/lib;/software/mpi/openmpi/3.1.6/gcc-9.3.0/lib' '-DCMAKE_PREFIX_PATH:STRING=/software/mpi/openmpi/3.1.6/gcc-9.3.0;/home/staff/lk58p/mofem_install/spack/opt/spack/linux-centos7-sandybridge/gcc-9.3.0/openblas-0.3.12-uneqj3vkoendtqclj5ltrmwbfcrt7igq' '-DBUILD_SHARED_LIBS:BOOL=ON' '-DBUILD_STATIC_LIBS:BOOL=OFF' '-DLAPACK_FOUND=true' '-DLAPACK_INCLUDE_DIRS=/home/staff/lk58p/mofem_install/spack/opt/spack/linux-centos7-sandybridge/gcc-9.3.0/openblas-0.3.12-uneqj3vkoendtqclj5ltrmwbfcrt7igq/include' '-DLAPACK_LIBRARIES=/home/staff/lk58p/mofem_install/spack/opt/spack/linux-centos7-sandybridge/gcc-9.3.0/openblas-0.3.12-uneqj3vkoendtqclj5ltrmwbfcrt7igq/lib/libopenblas.so' '-DBLAS_LIBRARIES=/home/staff/lk58p/mofem_install/spack/opt/spack/linux-centos7-sandybridge/gcc-9.3.0/openblas-0.3.12-uneqj3vkoendtqclj5ltrmwbfcrt7igq/lib/libopenblas.so' '-DCMAKE_C_FLAGS:STRING=' '/tmp/lk58p/spack-stage/spack-stage-netlib-scalapack-2.1.0-mvtsabocone2ppyci7sebdktbcfwgtx3/spack-src'

1 error found in build log:

9 -- Check for working Fortran compiler: /home/staff/lk58p/mofem_install/spack/lib/spack/env/gcc/gfortran

10 -- Check for working Fortran compiler: /home/staff/lk58p/mofem_install/spack/lib/spack/env/gcc/gfortran -- works

11 -- Detecting Fortran compiler ABI info

12 -- Detecting Fortran compiler ABI info - done

13 -- Checking whether /home/staff/lk58p/mofem_install/spack/lib/spack/env/gcc/gfortran supports Fortran 90

14 -- Checking whether /home/staff/lk58p/mofem_install/spack/lib/spack/env/gcc/gfortran supports Fortran 90 -- yes

>> 15 CMake Error at CMakeLists.txt:17 (if):

16 if given arguments:

17

18 "GNU" "STREQUAL" "GNU" "AND" "CMAKE_Fortran_COMPILER_VERSION" "VERSION_GREATER_EQUAL" "10"

19

20 Unknown arguments specified

21

See build log for details:

/tmp/lk58p/spack-stage/spack-stage-netlib-scalapack-2.1.0-mvtsabocone2ppyci7sebdktbcfwgtx3/spack-build-out.txt

L.

Andrei G. Shvarts

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Oct 25, 2021, 2:10:16 PM10/25/21

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Hi Lukasz,

No I don't remember seeing this. Have you followed the updated installation instructions? http://mofem.eng.gla.ac.uk/mofem/html/install_spack.html#spack_buckethead

Andrei

Lukasz Kaczmraczyk

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Oct 25, 2021, 2:11:41 PM10/25/21

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Thx.

Something has to change on server then. Or is something specific.

L.

Lukasz Kaczmraczyk

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Oct 25, 2021, 2:43:41 PM10/25/21

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Andrei,

We have solution!

On cluster is old cmake _AT_ 2.8.12 , and netlib-scalapack use features form newer version. The solution is to install newer camke,

spack install cmake _AT_ 3.18.4

spack load cmake _AT_ 3.18.4

We have to add this to documentation.

L.

Andrei G. Shvarts

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Oct 25, 2021, 3:08:36 PM10/25/21

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Lukasz,

Actually, I have cmake 3.18.4 installed with Spack on Buckethead. Probably I did spack load cmake during installation.