MixviR

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Welcome to the MixviR Google Group! MixviR is an R package originally written to identify and estimate the frequencies of SARS-CoV-2 (Covid-19) lineages in genomic samples taken from environmental sources such as wastewater or dust. However, it can be applied to any microbial taxon of interest. Feel free to use this forum to ask questions, make comments, report bugs, or have general discussions related to MixviR. We'll also plan to announce updates here, so if you're using the program, we encourage you to join the group and either check back often, or sign up for e-mail notifications to keep up with the latest news/features.

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Leonardo Caserta

1/15/23

Error in `dplyr::mutate()`:

Hello, I was able to run MixVir successfuly for a while, but now I'm receiving the following

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Error in `dplyr::mutate()`:

Hello, I was able to run MixVir successfuly for a while, but now I'm receiving the following

1/15/23

Leonardo Caserta, Mike Sovic3

12/13/22

Different format fields in VCF files

Hi Mike, Yes, there is DP and AF under INFO entry. The thing is, it reports only the variants, I don

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Different format fields in VCF files

Hi Mike, Yes, there is DP and AF under INFO entry. The thing is, it reports only the variants, I don

12/13/22

Rosemary Luong, Mike Sovic3

11/14/22

Vignette Example Error

It works now! Thank you so much. Rosemary On Monday, November 14, 2022 at 12:54:19 PM UTC-5 mike...@

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Vignette Example Error

It works now! Thank you so much. Rosemary On Monday, November 14, 2022 at 12:54:19 PM UTC-5 mike...@

11/14/22

Leonardo Caserta, Mike Sovic2

11/14/22

Error - adding variants

Hi Leonardo, Yep, looks like there's a typo in that section of code - sorry about that. The '

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Error - adding variants

Hi Leonardo, Yep, looks like there's a typo in that section of code - sorry about that. The '

11/14/22

Leonardo Caserta, Mike Sovic2

11/14/22

Problems during installation and running

Hi Leonardo, Interestingly, your post came just shortly after another that had a similar issue. Looks

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Problems during installation and running

Hi Leonardo, Interestingly, your post came just shortly after another that had a similar issue. Looks

11/14/22

Leonardo Caserta, Mike Sovic2

11/1/22

Hi Leonardo, I'd suggest working with the vignette - that's the document I put together to

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Hi Leonardo, I'd suggest working with the vignette - that's the document I put together to

11/1/22

6/30/22

VCF Format Clarification

Something I don't think was clear from the documentation in the initial version of MixviR... In

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VCF Format Clarification

Something I don't think was clear from the documentation in the initial version of MixviR... In

6/30/22

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