I've had similar issues. Several times I've even blown the servo completely. What I think is happening is there is too much stress on the servo caused by the pinch being too tight. Thus when the servo tries to turn, it struggles to fully complete it's turn and overheats, eventually breaking the motor. Obviously there is a balance here: you want the pinch to be tight enough to prevent leakage, but loose enough so the servo can turn easily.
I've had some success relieving stress while maintaining a tight seal by (1) sanding down the center part of the 3D-printed pinch clip and (2) swapping out the pinchers for slightly smaller ones. Regarding solution #2, what I recommend doing is taking out a handful of your pinchers and lining them up next to one another. You'll notice that even though these parts are laser cut, there are noticeable differences in their heights. Use the shortest ones and see if that relieves stress on the servo.
Another thing I've found useful is to always label the pinch clips and pinchers that go with each chamber. For whatever reason (probably due to the variability in 3D printed parts), different lines have a different optimal amount of sanding and sized pinchers. Through trial and error I've nailed down the perfect combo for most of my chambers, but I'm having to constantly adjust them.
All of this being said, I just had another issue of overheating of the pinch valve servo this week. So hopefully one of these two solutions will fix it, but if you come up with anything better, let me know.
-Andrew Morgenthaler
University of Colorado Boulder