SSEA script

[Gireesh K. Bogu]

Hi

Where can I access SSEA (Sample Set Enrichment Analysis) script that used in your MiTranscriptome paper ?

Thanks
Gireesh

[Yashar Niknafs]

Hi Gireesh, 

The source code for SSEA can be found here: https://code.google.com/p/ssea/

We are working on an SSEA manuscript that will provide the SSEA code to the research community. Sorry that this is not currently in a state to be readily used by others, but we are working on it!

-Yashar 

[yuanzhi...@gmail.com]

Hi, Yashar

  I use mitranscriptome HNSC lncRNA normalized counts as input for SSEA, and I found SSEA will calculate a size factor for each sample (but value of size factor for each sample is nan). I make a size factor file with all size factor equal 1 (normalized counts get from MiTranscriptom and dived by 1, so SSEA will use this as calculation input). the results show that resample es and null es are huge, and results is very different from results in MiTranscriptome for the same lncRNA transcripts。Sample weight is very strange too.

[yuanzhi...@gmail.com]

Hi, Gireesh

did you run SSEA correctly and get expected results ?