Dear Yashar (and others),
For a project concerning the expression patterns of
genome-wide transcripts in cancer, we would like to incorporate the
MiTranscriptome dataset.
What
is the procedure to gain access to the full MiTranscriptome dataset
files, e.g. GTF/BED transcript annotations, library annotation and
expression count matrixes of all lncRNAs and protein-coding transcripts?
I've seen several posts on this forum hinting at a late summer (2016) release of the entire MiTranscriptome expression dataset but I am unsure whether the currently available files via the MiTranscriptome site contain 'all' transcripts?
(These files only contain the expression values of 16981 transcripts)
Kind regards,
Ing. Job van Riet
Bioinformatician/PhD candidate
Cancer Computational Biology Center
Erasmus MC